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Carg17830 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17830
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCarg_Chr10:4293683..4294017
RNA-Seq ExpressionCarg17830
SyntenyCarg17830
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590132.1 E3 ubiquitin-protein ligase PUB22, partial [Cucurbita argyrosperma subsp. sororia]3.9e-45100Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

KAG7023799.1 E3 ubiquitin-protein ligase PUB22, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-53100Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLRWYEVC
        MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLRWYEVC
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLRWYEVC

Query:  SRSSVRV
        SRSSVRV
Subjt:  SRSSVRV

XP_022961129.1 E3 ubiquitin-protein ligase PUB23-like [Cucurbita moschata]3.9e-45100Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

XP_022987530.1 E3 ubiquitin-protein ligase PUB23-like [Cucurbita maxima]1.5e-4498.95Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMD LCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

XP_023516896.1 E3 ubiquitin-protein ligase PUB22-like [Cucurbita pepo subsp. pepo]3.9e-45100Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

TrEMBL top hitse value%identityAlignment
A0A0A0LXW1 RING-type E3 ubiquitin transferase5.6e-3784.95Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        +D+LCECAEGRAELL+HGGGMAVV RKILRVSN  NEKAVRILY+VCKNNVGN GVAEEMVEVG VGKLCLMLQ+GG+LKT ERIKEILH L+
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

A0A1S3BNV9 RING-type E3 ubiquitin transferase3.6e-3682.8Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        +D+LCECAEGRAELL+HGGGMAVV RKILRVSN  NEKAVRILY+VCKNNVGN GVAEEMVEVG V KLCLMLQ+GG+LKT ER+KEILH L+
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

A0A5A7V004 E3 ubiquitin-protein ligase PUB22-like3.6e-3682.8Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        +D+LCECAEGRAELL+HGGGMAVV RKILRVSN  NEKAVRILY+VCKNNVGN GVAEEMVEVG V KLCLMLQ+GG+LKT ER+KEILH L+
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

A0A6J1HD28 RING-type E3 ubiquitin transferase1.9e-45100Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

A0A6J1JH48 RING-type E3 ubiquitin transferase7.2e-4598.95Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
        MAMD LCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLR

SwissProt top hitse value%identityAlignment
Q5PNY6 U-box domain-containing protein 218.3e-0629.35Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL
        +D +CE   GR E+ ++   M ++ +KI +VS  +   ++ ++  + K   GN    E+ V +GA  K+ L+LQ+G   +T E+  E+L  +
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL

Q84TG3 E3 ubiquitin-protein ligase PUB232.3e-1647.37Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL
        + +D LC+CAEGRAE L HG  +AVV +KILRVS  ++++AVR+L      +VG F     +  EM+++G V KLCL+LQ+    KT E+ KE+L
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL

Q9C8D1 U-box domain-containing protein 202.2e-0631.52Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL
        ++ +CE  EGR ++ R+   + ++ +KIL++S    +  V +++ VCK+  G+    EE + +GA  KL +MLQ+G    T E++ E+L  +
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL

Q9SF15 E3 ubiquitin-protein ligase PUB249.8e-1547.92Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW
        + +LC CA GRAE+L H GG+AVV +++LRVS  ++++A+ IL  V K +  N  V EEMV VG V KLC +L +   L   E+ KEIL  HF  W
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW

Q9SVC6 E3 ubiquitin-protein ligase PUB227.3e-1847.12Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFL
        + +D LC+CAEGRAE L HG  +AVV++KILRVS  ++E+AVR+L      +VG F     + +EM+++G V KLCL+LQ+    KT E+ KE+  LH  
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFL

Query:  RWYE
         W E
Subjt:  RWYE

Arabidopsis top hitse value%identityAlignment
AT1G66160.1 CYS, MET, PRO, and GLY protein 11.6e-0731.52Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL
        ++ +CE  EGR ++ R+   + ++ +KIL++S    +  V +++ VCK+  G+    EE + +GA  KL +MLQ+G    T E++ E+L  +
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL

AT1G66160.2 CYS, MET, PRO, and GLY protein 11.6e-0731.52Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL
        ++ +CE  EGR ++ R+   + ++ +KIL++S    +  V +++ VCK+  G+    EE + +GA  KL +MLQ+G    T E++ E+L  +
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFL

AT2G35930.1 plant U-box 231.7e-1747.37Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL
        + +D LC+CAEGRAE L HG  +AVV +KILRVS  ++++AVR+L      +VG F     +  EM+++G V KLCL+LQ+    KT E+ KE+L
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL

AT3G11840.1 plant U-box 247.0e-1647.92Show/hide
Query:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW
        + +LC CA GRAE+L H GG+AVV +++LRVS  ++++A+ IL  V K +  N  V EEMV VG V KLC +L +   L   E+ KEIL  HF  W
Subjt:  MDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEIL--HFLRW

AT3G52450.1 plant U-box 225.2e-1947.12Show/hide
Query:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFL
        + +D LC+CAEGRAE L HG  +AVV++KILRVS  ++E+AVR+L      +VG F     + +EM+++G V KLCL+LQ+    KT E+ KE+  LH  
Subjt:  MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNF----GVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEI--LHFL

Query:  RWYE
         W E
Subjt:  RWYE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCATGGACCAGCTTTGTGAATGTGCCGAAGGTCGGGCTGAGCTGCTCCGACACGGAGGCGGGATGGCGGTCGTGGCGAGGAAGATTCTTCGAGTGTCGAATTTTAG
CAACGAGAAGGCGGTTAGGATTTTGTACCATGTTTGTAAGAACAACGTTGGGAATTTCGGAGTTGCTGAGGAGATGGTGGAGGTTGGGGCTGTTGGAAAGCTTTGTTTGA
TGCTTCAAATTGGTGGAAGTTTGAAGACTAATGAAAGAATCAAGGAAATTCTTCATTTTCTTCGATGGTACGAAGTGTGTTCTCGTTCTTCCGTCCGGGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCATGGACCAGCTTTGTGAATGTGCCGAAGGTCGGGCTGAGCTGCTCCGACACGGAGGCGGGATGGCGGTCGTGGCGAGGAAGATTCTTCGAGTGTCGAATTTTAG
CAACGAGAAGGCGGTTAGGATTTTGTACCATGTTTGTAAGAACAACGTTGGGAATTTCGGAGTTGCTGAGGAGATGGTGGAGGTTGGGGCTGTTGGAAAGCTTTGTTTGA
TGCTTCAAATTGGTGGAAGTTTGAAGACTAATGAAAGAATCAAGGAAATTCTTCATTTTCTTCGATGGTACGAAGTGTGTTCTCGTTCTTCCGTCCGGGTTTGA
Protein sequenceShow/hide protein sequence
MAMDQLCECAEGRAELLRHGGGMAVVARKILRVSNFSNEKAVRILYHVCKNNVGNFGVAEEMVEVGAVGKLCLMLQIGGSLKTNERIKEILHFLRWYEVCSRSSVRV