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Carg17833 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17833
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionBHLH domain-containing protein
Genome locationCarg_Chr10:4325733..4326262
RNA-Seq ExpressionCarg17833
SyntenyCarg17833
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588244.1 Transcription factor LHW, partial [Cucurbita argyrosperma subsp. sororia]4.2e-0788.24Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACRR+IVGN+DP RKRSGGLRTKQAGRGSCRG+
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

KAG6590135.1 hypothetical protein SDJN03_15558, partial [Cucurbita argyrosperma subsp. sororia]1.4e-10100Show/hide
Query:  MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPR
        MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPR
Subjt:  MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPR

KAG7023802.1 hypothetical protein SDJN02_14828, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-50100Show/hide
Query:  MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPRRFGRKRLSLFLLCFSPTPPFPLCFFKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGR
        MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPRRFGRKRLSLFLLCFSPTPPFPLCFFKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGR
Subjt:  MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPRRFGRKRLSLFLLCFSPTPPFPLCFFKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGR

Query:  GSCRGS
        GSCRGS
Subjt:  GSCRGS

XP_016900899.1 PREDICTED: uncharacterized protein LOC103491944 [Cucumis melo]8.5e-0894.12Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACRRRIVGN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

XP_017242104.1 PREDICTED: uncharacterized protein LOC108214553 [Daucus carota subsp. sativus]3.2e-0791.18Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACRR I GN+DPVRKRSGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

TrEMBL top hitse value%identityAlignment
A0A1S4DY36 uncharacterized protein LOC1034919444.1e-0894.12Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACRRRIVGN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

A0A2C9W1D8 Uncharacterized protein7.8e-0776.19Show/hide
Query:  FKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        FKL   R M CRR + GN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  FKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

A0A2G9GZE1 Uncharacterized protein1.3e-0685.29Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MAC+R I GN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

A0A5D2P2Z4 Uncharacterized protein6.6e-0687.5Show/hide
Query:  CRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        CRR I GN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  CRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

V7BY75 Uncharacterized protein1.3e-0685.29Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACR  +VGN+DP RKRSGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G27228.1 conserved peptide upstream open reading frame 66.9e-0876.47Show/hide
Query:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS
        MACR  I  ++DP RK+SGGLRTKQAGRGSCRGS
Subjt:  MACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGACTTCACCGCAGTTGCAGAGCTTTTATCACAGAGTGATTACGAGATAAATTTGCAGAGCCAAAGTGAAAGAGGAGGAAGGAGGAAGAAGAAGGAAGAACTGAA
CAGACCCAGGCGCTTTGGGAGAAAGCGCTTGTCGCTGTTCCTGCTCTGTTTCTCTCCCACTCCACCTTTTCCTCTCTGTTTTTTCAAGCTTTCGGCTCGCCGGAGCATGG
CTTGCCGGAGAAGAATTGTGGGAAATATTGACCCAGTTAGGAAGAGAAGCGGTGGTTTGAGAACGAAGCAGGCAGGGAGAGGATCGTGTCGTGGAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTGGACTTCACCGCAGTTGCAGAGCTTTTATCACAGAGTGATTACGAGATAAATTTGCAGAGCCAAAGTGAAAGAGGAGGAAGGAGGAAGAAGAAGGAAGAACTGAA
CAGACCCAGGCGCTTTGGGAGAAAGCGCTTGTCGCTGTTCCTGCTCTGTTTCTCTCCCACTCCACCTTTTCCTCTCTGTTTTTTCAAGCTTTCGGCTCGCCGGAGCATGG
CTTGCCGGAGAAGAATTGTGGGAAATATTGACCCAGTTAGGAAGAGAAGCGGTGGTTTGAGAACGAAGCAGGCAGGGAGAGGATCGTGTCGTGGAAGTTAG
Protein sequenceShow/hide protein sequence
MVDFTAVAELLSQSDYEINLQSQSERGGRRKKKEELNRPRRFGRKRLSLFLLCFSPTPPFPLCFFKLSARRSMACRRRIVGNIDPVRKRSGGLRTKQAGRGSCRGS