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Carg17842 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17842
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSerine/arginine-rich SC35-like splicing factor SCL30A isoform X1
Genome locationCarg_Chr10:4376173..4376880
RNA-Seq ExpressionCarg17842
SyntenyCarg17842
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0055935.1 serine/arginine-rich SC35-like splicing factor SCL30A isoform X1 [Cucumis melo var. makuwa]4.9e-1965.88Show/hide
Query:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDL
        MIEEDLL G+LV  DI VP+L+ + GILVH LHAMQG G  VM MH HHQN+ LTQD+ PL+TD  VERGLSHD  AV   +PDL
Subjt:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDL

KAG7022151.1 hypothetical protein SDJN02_15880, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-2160.53Show/hide
Query:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLL--TDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQ
        MI EDLLHG      ILV  L+AMQG+L H LHAMQG G AVM MHP HQ++  T D  P L   DGIVERG +HDS AVVGH+PD  + +V+EVEV+V+
Subjt:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLL--TDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQ

Query:  -----HGAEVEVQA
             HGAEVEVQA
Subjt:  -----HGAEVEVQA

KAG7023811.1 hypothetical protein SDJN02_14837, partial [Cucurbita argyrosperma subsp. argyrosperma]2.6e-52100Show/hide
Query:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHG
        MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHG
Subjt:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHG

Query:  AEVEVQAH
        AEVEVQAH
Subjt:  AEVEVQAH

XP_011660179.1 uncharacterized protein LOC101222791 isoform X2 [Cucumis sativus]1.6e-2566.36Show/hide
Query:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHG
        MIEED LH   VR DI VPQL+ + GILVH  HAMQG GP  M MHP+HQN+ LTQD  PL+TD  VERGLSHD  AV GH+PDL  SMV+ V V+VQH 
Subjt:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHG

Query:  AEVEVQA
         EVEVQA
Subjt:  AEVEVQA

TrEMBL top hitse value%identityAlignment
A0A5A7UQN8 Serine/arginine-rich SC35-like splicing factor SCL30A isoform X12.4e-1965.88Show/hide
Query:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDL
        MIEEDLL G+LV  DI VP+L+ + GILVH LHAMQG G  VM MH HHQN+ LTQD+ PL+TD  VERGLSHD  AV   +PDL
Subjt:  MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCACGCCATGCAAGG
TCAAGGTCCCGCAGTTATGACAATGCATCCCCACCACCAAAACCAAGAGCTTACTCAAGATCGGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACG
ACAGCCTAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCCAAGCCCATTGA
mRNA sequenceShow/hide mRNA sequence
ATGATCGAAGAAGATCTCCTCCACGGTCTTCTCGTTCGCCACGATATTCTCGTTCCCCAGCTCCACGCCATGCAAGGTATTCTCGTTCACCTGCTCCACGCCATGCAAGG
TCAAGGTCCCGCAGTTATGACAATGCATCCCCACCACCAAAACCAAGAGCTTACTCAAGATCGGCGTCCCCTCCTGACAGACGGAATAGTCGAGAGAGGTCTTTCCCACG
ACAGCCTAGCCGTGGTAGGTCATTCTCCCGATCTCCGCGACTCGATGGTTCGAGAAGTCGAAGTCCAAGTCCAGCACGGGGCAGAAGTCGAAGTCCAAGCCCATTGAGAG
GCTGAAGCCTGAGCATTCGCTGGAGCCGAAGTCAACAGGAAAACAACTCGAAACTTGGTCGAGAACAATTACAATGTACTATTGCCATTGCTTAGTTTGATGTTTCCGCT
ATAGACATCATTTCGTCGTTTATATTGTTGTTCGGTAGCGTTCGTTCGTTGTTCTTAGGAATCTATGCGTTATCAAGATTTTGAGTTTTTTTTTTTTTTTTTTTCTTCTT
TCCTGTTGTGGTGATGCATTACAATATATTTCAAGCTTTTCTATCATCATATT
Protein sequenceShow/hide protein sequence
MIEEDLLHGLLVRHDILVPQLHAMQGILVHLLHAMQGQGPAVMTMHPHHQNQELTQDRRPLLTDGIVERGLSHDSLAVVGHSPDLRDSMVREVEVQVQHGAEVEVQAH