CuGenDBv2

Gene ID	Carg17847
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	succinate dehydrogenase subunit 6, mitochondrial-like
Genome location	Carg_Chr10:4406314..4408390
RNA-Seq Expression	Carg17847
Synteny	Carg17847
Gene Ontology terms	GO:0005749 - mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0043495 - protein membrane anchor (molecular function)
InterPro domains	IPR034574 - Succinate dehydrogenase subunit 6, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6590149.1 Succinate dehydrogenase subunit 6, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-82

100

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

XP_022927277.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

2.5e-74

91.16

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SDVEEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

XP_022961107.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita moschata]

3.6e-81

98.64

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSD EEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

XP_022988231.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita maxima]

6.8e-80

97.28

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRD PLPPWSSSDVEEFIAFNPVHGP LKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLL GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

XP_023515414.1 succinate dehydrogenase subunit 6, mitochondrial-like [Cucurbita pepo subsp. pepo]

3.4e-79

97.28

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWE YKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFI FNPVHGPALKTAREAVNFGL GTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

TrEMBL top hits

e value

%identity

Alignment

A0A6J1DK58 succinate dehydrogenase subunit 6, mitochondrial

6.0e-74

89.8

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNY+P+VQR+KPLP WSSSDVE FIA +PVHGP LKTAREAVNFGLTG+VIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        S LAGGVFGWTFGHE+ANHWYQLYR+DTM AQVKFMEWWRNKNEG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

A0A6J1EGQ0 succinate dehydrogenase subunit 6, mitochondrial-like

1.2e-74

91.16

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SDVEEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+EG F
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

A0A6J1H994 succinate dehydrogenase subunit 6, mitochondrial-like

1.7e-81

98.64

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSD EEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWW NKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

A0A6J1HQ77 succinate dehydrogenase subunit 6, mitochondrial-like

3.0e-73

91.67

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQR+KPLP WS SDVEEFIA +PVHGP LKTAREAVNFGLTG++IGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        S LAGG FGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNK+E
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

A0A6J1JGN4 succinate dehydrogenase subunit 6, mitochondrial-like

3.3e-80

97.28

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Query:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
        ME SSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRD PLPPWSSSDVEEFIAFNPVHGP LKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL
Subjt:  MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGL

Query:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
        SLL GGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF
Subjt:  SLLAGGVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

SwissProt top hits

e value

%identity

Alignment

Q6ZCC4 Succinate dehydrogenase subunit 6, mitochondrial

2.1e-31

45.19

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Query:  KHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWT
        +H EG K  W++ FS LD +     RDKPLP W+ +DV+EFIA +PV+GP LK  RE+  F L G ++G     G+A KYS++ HG  L+   G + G  
Subjt:  KHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGWT

Query:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGH
         G E+A HWYQLY+ D  GA ++F+ WW +K  G+
Subjt:  FGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGH

Q941A6 Succinate dehydrogenase subunit 6, mitochondrial

6.6e-54

69.06

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSDVEEFIA +PVHGP LKTAREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Arabidopsis top hits

e value

%identity

Alignment

AT1G08480.1 unknown protein

4.7e-55

69.06

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Query:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG
        S+SF  K+W G K+FWS+R S  +NY+ F +RD PLP WSSSDVEEFIA +PVHGP LKTAREAV FG+TG  +GAVSTA  AWKYSRS HGA LS L G
Subjt:  SQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAG

Query:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE
        GVFGWTFG E+ANH  QLY++DTM AQVKFMEWW  K++
Subjt:  GVFGWTFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNE

Sequences

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CDS sequence

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ATGGAACATTCGTCGTCTCAATCCTTCTTCAGGAAGCACTGGGAAGGTTACAAGGAATTTTGGTCGGAGAGATTTTCGATCCTCGACAACTATTCTCCATTCGTCCAGCG
CGACAAGCCACTTCCTCCATGGTCTAGCTCCGATGTCGAGGAGTTTATTGCTTTCAACCCCGTTCATGGCCCCGCTTTGAAGACTGCCAGAGAAGCTGTGAACTTTGGCC
TTACAGGAACTGTTATTGGAGCTGTATCAACTGCAGGTGTTGCATGGAAATACTCGAGAAGTTTACATGGCGCTGGGCTGTCGTTACTGGCGGGAGGTGTATTCGGTTGG
ACTTTTGGCCATGAAATTGCAAATCATTGGTATCAACTTTACAGGGTGGACACCATGGGGGCACAAGTTAAGTTTATGGAGTGGTGGAGAAACAAGAACGAGGGACATTT
TTAA

mRNA sequence

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Protein sequence

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MEHSSSQSFFRKHWEGYKEFWSERFSILDNYSPFVQRDKPLPPWSSSDVEEFIAFNPVHGPALKTAREAVNFGLTGTVIGAVSTAGVAWKYSRSLHGAGLSLLAGGVFGW
TFGHEIANHWYQLYRVDTMGAQVKFMEWWRNKNEGHF

Carg17847 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome