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Carg17888 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17888
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionsuppressor of phytochrome b 5
Genome locationCarg_Chr10:1219305..1220401
RNA-Seq ExpressionCarg17888
SyntenyCarg17888
Gene Ontology termsGO:0009691 - cytokinin biosynthetic process (biological process)
GO:0009736 - cytokinin-activated signaling pathway (biological process)
InterPro domainsIPR044670 - SOB-five-Like (SOFL) family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589579.1 hypothetical protein SDJN03_15002, partial [Cucurbita argyrosperma subsp. sororia]1.0e-75100Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
Subjt:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

XP_022921472.1 uncharacterized protein LOC111429737 isoform X1 [Cucurbita moschata]2.8e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

XP_022921474.1 uncharacterized protein LOC111429737 isoform X2 [Cucurbita moschata]2.8e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

XP_022921475.1 uncharacterized protein LOC111429737 isoform X3 [Cucurbita moschata]2.8e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

XP_023516938.1 uncharacterized protein LOC111780698 [Cucurbita pepo subsp. pepo]3.7e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSP--AAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTH
        MEPSQMFGVSEECHSSESGWTMYIGSP  AAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTH
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSP--AAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTH

Query:  QNKPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        QNKPNSC +TKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
Subjt:  QNKPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

TrEMBL top hitse value%identityAlignment
A0A6J1E0K4 uncharacterized protein LOC111429737 isoform X31.4e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

A0A6J1E0K6 uncharacterized protein LOC111429737 isoform X21.4e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

A0A6J1E405 uncharacterized protein LOC111429737 isoform X11.4e-7397.4Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSCF+T  KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARK IWMGKRN
Subjt:  KPNSCFQT--KPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

A0A6J1JBQ3 uncharacterized protein LOC111485335 isoform X31.5e-7297.37Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD EEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSC +TKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKR+
Subjt:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

A0A6J1JKS2 uncharacterized protein LOC111485335 isoform X11.5e-7297.37Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
        MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASD EEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQN

Query:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN
        KPNSC +TKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKR+
Subjt:  KPNSCFQTKPKPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN

SwissProt top hitse value%identityAlignment
Q67YG7 Protein SOB FIVE-LIKE 18.5e-0443.04Show/hide
Query:  EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRH
        EE  S ESGWTMYI          S    D   D     A D  E+++     D   ++SDDSMASDASSGPS+Q  +H
Subjt:  EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRH

Q9FKQ9 Protein SOB FIVE-LIKE 42.0e-0546.15Show/hide
Query:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QDDSDDSMASDASSGPSHQQ
        EEC SSESGWT Y+ SP   D    VD        ED  ++GY   N             DSDDSMASDASSGP++Q+
Subjt:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QDDSDDSMASDASSGPSHQQ

Q9LEZ1 Protein SUPPRESSOR OF PHYTOCHROME B 52.9e-0443.84Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGP
        ME + +FG  E+C S ESGWTMY+   A+     D D     D+EE+E+          D  DSM SDASSGP
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGP

Arabidopsis top hitse value%identityAlignment
AT1G26210.1 SOB five-like 16.0e-0543.04Show/hide
Query:  EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRH
        EE  S ESGWTMYI          S    D   D     A D  E+++     D   ++SDDSMASDASSGPS+Q  +H
Subjt:  EECHSSESGWTMYI---------GSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRH

AT3G30580.1 unknown protein7.9e-0534.13Show/hide
Query:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASD---EEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQ-----RRHPFGGMKNPPHALLPLFTHQNKP
        EEC SSESGWT YI S    +    +D         E++  ++   Y+IN+ DSDDSMASDASSGPS+ Q     +R     ++N       +++H+   
Subjt:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASD---EEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQ-----RRHPFGGMKNPPHALLPLFTHQNKP

Query:  NSCFQTKPKPKPKKPLKKKQRAERKE
         +      + K KK  + K R+ +K+
Subjt:  NSCFQTKPKPKPKKPLKKKQRAERKE

AT5G08150.1 suppressor of phytochrome b 52.1e-0543.84Show/hide
Query:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGP
        ME + +FG  E+C S ESGWTMY+   A+     D D     D+EE+E+          D  DSM SDASSGP
Subjt:  MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGP

AT5G38790.1 unknown protein1.4e-0646.15Show/hide
Query:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QDDSDDSMASDASSGPSHQQ
        EEC SSESGWT Y+ SP   D    VD        ED  ++GY   N             DSDDSMASDASSGP++Q+
Subjt:  EECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDIN-----------QDDSDDSMASDASSGPSHQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCTGGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGA
TACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGATATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAA
GTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTTTGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCC
AAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAAGTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTG
GATGGGTAAAAGAAAC
mRNA sequenceShow/hide mRNA sequence
GAAAAGAATACAAATGGAAGAACCAAAAGACAGAAAGGAATAAGAATTCTGAAGTTATGGAGCCATCCCAAATGTTTGGAGTTTCAGAAGAATGTCACAGCAGTGAATCT
GGTTGGACTATGTATATTGGATCCCCTGCAGCTGCTGATGGTTCCAGTGATGTTGATACTGGTGCAGCTTCTGATGAAGAAGAAGATGAAGAACACAAAGGCTATTATGA
TATTAACCAAGATGACAGCGATGACTCCATGGCTTCTGATGCTTCTTCAGGCCCAAGTCATCAACAAAGACGCCACCCATTTGGTGGGATGAAGAATCCCCCCCATGCTT
TGCTGCCTCTCTTCACCCACCAGAACAAGCCAAACTCTTGCTTCCAAACCAAACCCAAACCCAAACCCAAGAAGCCATTAAAGAAGAAGCAAAGAGCTGAAAGAAAAGAA
GTGAAAGAGCCAAAGAGCTCAGTTCAGAGCAGCTCCAAGGCAAGAAAGAGCATCTGGATGGGTAAAAGAAAC
Protein sequenceShow/hide protein sequence
MEPSQMFGVSEECHSSESGWTMYIGSPAAADGSSDVDTGAASDEEEDEEHKGYYDINQDDSDDSMASDASSGPSHQQRRHPFGGMKNPPHALLPLFTHQNKPNSCFQTKP
KPKPKKPLKKKQRAERKEVKEPKSSVQSSSKARKSIWMGKRN