; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg17943 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg17943
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr10:972042..972380
RNA-Seq ExpressionCarg17943
SyntenyCarg17943
Gene Ontology termsGO:0005515 - protein binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589528.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]6.8e-5698.21Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGAL+QGKWNYGFIYQN+LRLNVFVGTALTDMYAKCGAVMRQRRSLK
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERRTSVHGMS
        KLERRTSVHGMS
Subjt:  KLERRTSVHGMS

KAG7023213.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]4.7e-57100Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERRTSVHGMS
        KLERRTSVHGMS
Subjt:  KLERRTSVHGMS

XP_022134759.1 pentatricopeptide repeat-containing protein At4g21065-like [Momordica charantia]2.2e-3877.14Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKFMEAINAFRGMLAAG EPSERT VVVL ACSHLGALNQG W + FIYQN LRLNVFVGTAL DMYAKCGAV    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  +
Subjt:  KLERR

XP_022925029.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita moschata]3.7e-3877.14Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKF EAINAFRGMLAAG EPSERT VVVL ACSHLGALNQGKW + FIYQN LRLNVFVGTAL DMYAKCG V    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  R
Subjt:  KLERR

XP_023529316.1 pentatricopeptide repeat-containing protein At4g21065-like [Cucurbita pepo subsp. pepo]4.9e-3878.43Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKF EAINAFRGMLAAG EPSERT VVVL ACSHLGALNQGKW + FIYQN LRLNVFVGTAL DMYAKCG V    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KL
        ++
Subjt:  KL

TrEMBL top hitse value%identityAlignment
A0A1S4DZH3 pentatricopeptide repeat-containing protein At4g21065-like4.9e-3672.38Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        M +RN+VTWNALI GYTHNRKFMEAI+AFRGMLAAG +PSERT V+VL ACSHLGALNQGKW + FIY N LRLNVFVGTAL DMYAKCGAV    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  +
Subjt:  KLERR

A0A5A7US40 Pentatricopeptide repeat-containing protein4.9e-3672.38Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        M +RN+VTWNALI GYTHNRKFMEAI+AFRGMLAAG +PSERT V+VL ACSHLGALNQGKW + FIY N LRLNVFVGTAL DMYAKCGAV    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  +
Subjt:  KLERR

A0A6J1BZP4 pentatricopeptide repeat-containing protein At4g21065-like1.1e-3877.14Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKFMEAINAFRGMLAAG EPSERT VVVL ACSHLGALNQG W + FIYQN LRLNVFVGTAL DMYAKCGAV    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  +
Subjt:  KLERR

A0A6J1EAY2 pentatricopeptide repeat-containing protein At4g21065-like1.8e-3877.14Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKF EAINAFRGMLAAG EPSERT VVVL ACSHLGALNQGKW + FIYQN LRLNVFVGTAL DMYAKCG V    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KLERR
        ++  R
Subjt:  KLERR

A0A6J1KY52 pentatricopeptide repeat-containing protein At4g21065-like3.1e-3878.43Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK
        MP+RNSVTWNALI GYTHNRKF EAINAFRGMLAAG EPSERT VVVL ACSHLGALNQGKW + FIYQN LRLNVFVGTAL DMYAKCG V    +  +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLK

Query:  KL
        ++
Subjt:  KL

SwissProt top hitse value%identityAlignment
Q38959 Pentatricopeptide repeat-containing protein At3g26630, chloroplastic8.4e-1742.27Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRR
        MP RN V+W A+I  Y  NR+  EA   FR M     +P+E T V +L A + LG+L+ G+W + + ++N   L+ F+GTAL DMY+KCG++   R+
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRR

Q683I9 Pentatricopeptide repeat-containing protein At3g628904.5e-1841.03Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGML-----AAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQ
        MP+RN ++W+ LI GY    K+ EA++ FR M       A   P+E T   VL AC  LGAL QGKW + +I +  + +++ +GTAL DMYAKCG++ R 
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGML-----AAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQ

Query:  RRSLKKLERRTSVHGMS
        +R    L  +  V   S
Subjt:  RRSLKKLERRTSVHGMS

Q9C866 Pentatricopeptide repeat-containing protein At1g314304.9e-1743.96Show/hide
Query:  PKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        P ++ V W A++ GY    +F EA+  FR M  AG  P     V +L  C+  GAL QGKW +G+I +N + ++  VGTAL DMYAKCG +
Subjt:  PKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

Q9SJG6 Pentatricopeptide repeat-containing protein At2g42920, chloroplastic3.4e-1844.57Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        MP+RN V+WN++I G+  N +F +A++ FR M     +P   T V +L AC++LGA  QG+W + +I +N   LN  V TAL DMY KCG +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

Q9SX45 Pentatricopeptide repeat-containing protein At1g502706.4e-1742.39Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        MP RN VTW ALI GY  +R F + +  F  ML +   P+E+T   VL AC+H+GAL++G+  + ++ +N + +N   GT L D+Y KCG +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

Arabidopsis top hitse value%identityAlignment
AT1G31430.1 Pentatricopeptide repeat (PPR-like) superfamily protein3.5e-1843.96Show/hide
Query:  PKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        P ++ V W A++ GY    +F EA+  FR M  AG  P     V +L  C+  GAL QGKW +G+I +N + ++  VGTAL DMYAKCG +
Subjt:  PKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

AT1G50270.1 Pentatricopeptide repeat (PPR) superfamily protein4.6e-1842.39Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        MP RN VTW ALI GY  +R F + +  F  ML +   P+E+T   VL AC+H+GAL++G+  + ++ +N + +N   GT L D+Y KCG +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

AT2G42920.1 Pentatricopeptide repeat (PPR-like) superfamily protein2.4e-1944.57Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV
        MP+RN V+WN++I G+  N +F +A++ FR M     +P   T V +L AC++LGA  QG+W + +I +N   LN  V TAL DMY KCG +
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAV

AT3G26630.1 Tetratricopeptide repeat (TPR)-like superfamily protein6.0e-1842.27Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRR
        MP RN V+W A+I  Y  NR+  EA   FR M     +P+E T V +L A + LG+L+ G+W + + ++N   L+ F+GTAL DMY+KCG++   R+
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRR

AT3G62890.1 Pentatricopeptide repeat (PPR) superfamily protein3.2e-1941.03Show/hide
Query:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGML-----AAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQ
        MP+RN ++W+ LI GY    K+ EA++ FR M       A   P+E T   VL AC  LGAL QGKW + +I +  + +++ +GTAL DMYAKCG++ R 
Subjt:  MPKRNSVTWNALIIGYTHNRKFMEAINAFRGML-----AAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQ

Query:  RRSLKKLERRTSVHGMS
        +R    L  +  V   S
Subjt:  RRSLKKLERRTSVHGMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCAAGAGAAATTCGGTTACTTGGAATGCTCTGATTATTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCAGAGGAATGCTGGCAGCTGGGAC
TGAACCGAGTGAAAGAACCGCGGTGGTAGTTCTATTGGCTTGTTCTCATTTGGGAGCTTTAAATCAGGGAAAGTGGAACTATGGATTTATATATCAGAATGATTTGAGAC
TGAACGTGTTTGTGGGCACAGCACTCACTGATATGTATGCTAAATGTGGGGCTGTGATGAGGCAAAGAAGGTCTTTGAAGAAATTGGAGAGAAGAACATCTGTACATGGA
ATGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCAAGAGAAATTCGGTTACTTGGAATGCTCTGATTATTGGTTATACTCATAATAGAAAGTTTATGGAAGCTATCAATGCTTTCAGAGGAATGCTGGCAGCTGGGAC
TGAACCGAGTGAAAGAACCGCGGTGGTAGTTCTATTGGCTTGTTCTCATTTGGGAGCTTTAAATCAGGGAAAGTGGAACTATGGATTTATATATCAGAATGATTTGAGAC
TGAACGTGTTTGTGGGCACAGCACTCACTGATATGTATGCTAAATGTGGGGCTGTGATGAGGCAAAGAAGGTCTTTGAAGAAATTGGAGAGAAGAACATCTGTACATGGA
ATGTCTTGA
Protein sequenceShow/hide protein sequence
MPKRNSVTWNALIIGYTHNRKFMEAINAFRGMLAAGTEPSERTAVVVLLACSHLGALNQGKWNYGFIYQNDLRLNVFVGTALTDMYAKCGAVMRQRRSLKKLERRTSVHG
MS