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Carg18037 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18037
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 13
Genome locationCarg_Chr11:3694474..3695774
RNA-Seq ExpressionCarg18037
SyntenyCarg18037
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588129.1 Mediator of RNA polymerase II transcription subunit 13, partial [Cucurbita argyrosperma subsp. sororia]4.5e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

KAG7022021.1 hypothetical protein SDJN02_15750, partial [Cucurbita argyrosperma subsp. argyrosperma]7.7e-108100Show/hide
Query:  MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSA
        MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSA
Subjt:  MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSA

Query:  PVPARRLSPEGGGHEAILSSKDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIGLTIRNLPSSQSL
        PVPARRLSPEGGGHEAILSSKDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIGLTIRNLPSSQSL
Subjt:  PVPARRLSPEGGGHEAILSSKDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIGLTIRNLPSSQSL

XP_022930825.1 mediator of RNA polymerase II transcription subunit 13 [Cucurbita moschata]4.5e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

XP_022966517.1 mediator of RNA polymerase II transcription subunit 13 [Cucurbita maxima]4.5e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

XP_023529870.1 mediator of RNA polymerase II transcription subunit 13 [Cucurbita pepo subsp. pepo]4.5e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

TrEMBL top hitse value%identityAlignment
A0A0A0M2D5 Mediator of RNA polymerase II transcription subunit 133.1e-0647.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHC------------LLWMD--------RTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG
        P+MDGF    QKNP   HC             +W D         T   G  +SRQ  +G    F     QQGCMILQSC SPDT VSKPRDLVIARIG
Subjt:  PQMDGFDEVIQKNPRHPHC------------LLWMD--------RTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG

A0A5A7UKX2 Mediator of RNA polymerase II transcription subunit 133.1e-0646.46Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG
        P+MDGF    QKNP   HC   W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDT VSKPRDLVIARIG
Subjt:  PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG

A0A5D3CEL2 Mediator of RNA polymerase II transcription subunit 133.1e-0646.46Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG
        P+MDGF    QKNP   HC   W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDT VSKPRDLVIARIG
Subjt:  PQMDGFDEVIQKNPRHPHCLL-WMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIG

A0A6J1EXV9 Mediator of RNA polymerase II transcription subunit 132.2e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

A0A6J1HN68 Mediator of RNA polymerase II transcription subunit 132.2e-0747.47Show/hide
Query:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT
        P+MDGF    QKNP    C  W +   W                    G  +SRQ  +G    F     QQGCMILQSC SPDTSVSKPRDLVIARIGT
Subjt:  PQMDGFDEVIQKNPRHPHCLLWMDRTDWA-------------------GSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCTCAGATGGATGGGTTTGACGAGGTCATCCAAAAGAATCCTAGACATCCACACTGCTTGCTATGGATGGACAGAACGGACTGGGCTGGCTCTGATACCAGTAG
GCAGGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCCCAGCAAGGCTGTATGATACTTCAGTCATGTCTTTCTCCTGATACTAGTGTTTCCAAGCCTAGAG
ATTTGGTTATTGCAAGAATTGGAACCATTCTACGAACTCGAGTTTCTAGAGCCAGGTTTCGGGCTGGACCTCTCTCGGCTCCTGTGCCAGCGAGAAGGCTGAGCCCCGAA
GGGGGTGGACATGAGGCGATCTTGTCCAGCAAAGACGTTGGGCCCCAAGGGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGACGGCGGAAAAAAAAATCGGCCG
TTGCCAACAAACTTCGCCGCTGCCATGCCCCGATGCGGGATTATCATCAAGTAGCAACGGGACCTTCCTCTGCCAACAACAGGCAGATGAGTGTATTGGACTCACGATCA
GAAACCTTCCTTCCTCCCAATCCTTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGACCCTCAGATGGATGGGTTTGACGAGGTCATCCAAAAGAATCCTAGACATCCACACTGCTTGCTATGGATGGACAGAACGGACTGGGCTGGCTCTGATACCAGTAG
GCAGGGATACGAAGGGTCTGGAATGCATTTTTGTCCAAGTTCTGCCCAGCAAGGCTGTATGATACTTCAGTCATGTCTTTCTCCTGATACTAGTGTTTCCAAGCCTAGAG
ATTTGGTTATTGCAAGAATTGGAACCATTCTACGAACTCGAGTTTCTAGAGCCAGGTTTCGGGCTGGACCTCTCTCGGCTCCTGTGCCAGCGAGAAGGCTGAGCCCCGAA
GGGGGTGGACATGAGGCGATCTTGTCCAGCAAAGACGTTGGGCCCCAAGGGAGTGGCAGAAGGCCATTTATTCACTATGGGGATCTGACGGCGGAAAAAAAAATCGGCCG
TTGCCAACAAACTTCGCCGCTGCCATGCCCCGATGCGGGATTATCATCAAGTAGCAACGGGACCTTCCTCTGCCAACAACAGGCAGATGAGTGTATTGGACTCACGATCA
GAAACCTTCCTTCCTCCCAATCCTTATAGCCCGCATTCCAAAATTCTA
Protein sequenceShow/hide protein sequence
MDPQMDGFDEVIQKNPRHPHCLLWMDRTDWAGSDTSRQGYEGSGMHFCPSSAQQGCMILQSCLSPDTSVSKPRDLVIARIGTILRTRVSRARFRAGPLSAPVPARRLSPE
GGGHEAILSSKDVGPQGSGRRPFIHYGDLTAEKKIGRCQQTSPLPCPDAGLSSSSNGTFLCQQQADECIGLTIRNLPSSQSL