; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18040 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18040
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranslation initiation factor IF-2 isoform X1
Genome locationCarg_Chr11:12014175..12014816
RNA-Seq ExpressionCarg18040
SyntenyCarg18040
Gene Ontology termsGO:0006413 - translational initiation (biological process)
GO:0003743 - translation initiation factor activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589142.1 hypothetical protein SDJN03_17707, partial [Cucurbita argyrosperma subsp. sororia]2.1e-10698.59Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV
        LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAV LHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMRGTVV
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV

Query:  NRPRSSGNRPSSS
        NRPRSSGNRPSSS
Subjt:  NRPRSSGNRPSSS

KAG7022842.1 hypothetical protein SDJN02_16578, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-110100Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV
        LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV

Query:  NRPRSSGNRPSSS
        NRPRSSGNRPSSS
Subjt:  NRPRSSGNRPSSS

XP_022930822.1 uncharacterized protein LOC111437190 [Cucurbita moschata]2.3e-10598.12Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVL PQPQSRPSSADHRELPDRPRSQ GSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV
        LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMRGTVV
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV

Query:  NRPRSSGNRPSSS
        NRPRSSGNRPSSS
Subjt:  NRPRSSGNRPSSS

XP_022988942.1 uncharacterized protein LOC111486146 [Cucurbita maxima]4.8e-10394.55Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVL PQPQSRPSSADHREL DRPRSQSGSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR----
        LRPL +TGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMR    
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR----

Query:  ---GTVVNRPRSSGNRPSSS
           GTVVNRPRSSGNRPSSS
Subjt:  ---GTVVNRPRSSGNRPSSS

XP_023531071.1 uncharacterized protein LOC111793433 [Cucurbita pepo subsp. pepo]2.1e-9891.44Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQ--SGSDS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTN SKNP     SSSSS ASKSHGRMLVLTRPTPKPITLPPVL PQPQSRPSSADHRELPDRPRSQ  SGSDS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQ--SGSDS

Query:  ISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR--
        ISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAV LHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMR  
Subjt:  ISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR--

Query:  -----GTVVNRPRSSGNRPSSS
             GTVVNRPRSSGNRPSSS
Subjt:  -----GTVVNRPRSSGNRPSSS

TrEMBL top hitse value%identityAlignment
A0A0A0K3D7 Uncharacterized protein1.0e-8279.48Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR
        MAKTNKYTSINFNHIYDKNLSSNSKTG N S  KNPSSSSSS       SS S  +KSHGRMLVLTRPTP+PIT P  L PQPQSRPSSADHR +PD PR
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR

Query:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG
         QS SDSISLRPLGRTGTGAIAPSPIP LEK++EI  PP VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQYGNYGS  R  EDGRPKSGGG
Subjt:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG

Query:  YERMR-------GTVVNRPRSSGNRPSSS
        YERM+       G +VNRPRSSGNRPSSS
Subjt:  YERMR-------GTVVNRPRSSGNRPSSS

A0A1S3C160 translation initiation factor IF-2 isoform X14.6e-8379.91Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR
        MAKTNKYTSINFNHIYDKNLSSNSKTG N S  KNPSSSSSS       SS S  +KSHGRMLVLTRPTPKPIT P VL PQPQSRPSSADHR +PD+PR
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLS--KNPSSSSSS-------SSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR

Query:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG
         QS SDSISLRPLGRTGTGAIAPSPI  LEK +EI  PP VTLHKPEKFVPPHLRAGFVGKEERPVNVGIR RE NQRQYGNYGS +R  EDGRPKSGGG
Subjt:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG

Query:  YERMR-------GTVVNRPRSSGNRPSSS
        YERM+       G +VNRPRSSGNRPSSS
Subjt:  YERMR-------GTVVNRPRSSGNRPSSS

A0A6J1ERQ4 uncharacterized protein LOC1114371901.1e-10598.12Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNP SSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVL PQPQSRPSSADHRELPDRPRSQ GSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV
        LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMRGTVV
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVV

Query:  NRPRSSGNRPSSS
        NRPRSSGNRPSSS
Subjt:  NRPRSSGNRPSSS

A0A6J1GJZ3 uncharacterized protein LOC111455051 isoform X12.5e-8177.29Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSS---------SFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR
        MAKTNKYTSIN+NHIYDK+LS NSKTG N SKNPSSSSSSSSS         S A+KSHGRMLVLTRPTPKPI+ PPVL PQPQSR  SAD R + D+ R
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSS---------SFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPR

Query:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG
         Q  SDSISLRPLGRTGTGAIAPSPIP+LEK+KEI PPP VTLHKPEKFVPPHLRAGFVGKEERPV+VGIR RE NQRQYGNYGSP R  EDGRPKSGG 
Subjt:  SQSGSDSISLRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGG

Query:  YERM-------RGTVVNRPRSSGNRPSSS
        YERM       +G +VNRPRSSGNRP+SS
Subjt:  YERM-------RGTVVNRPRSSGNRPSSS

A0A6J1JEE6 uncharacterized protein LOC1114861462.3e-10394.55Show/hide
Query:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS
        MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVL PQPQSRPSSADHREL DRPRSQSGSDSIS
Subjt:  MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSIS

Query:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR----
        LRPL +TGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNR AEDGRPKSGGGYERMR    
Subjt:  LRPLGRTGTGAIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMR----

Query:  ---GTVVNRPRSSGNRPSSS
           GTVVNRPRSSGNRPSSS
Subjt:  ---GTVVNRPRSSGNRPSSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G54680.1 proteophosphoglycan-related1.9e-2543.29Show/hide
Query:  NKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFAS--KSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSD----S
        NKYTSINFNHI  K+              PSSSSSSSS+S++S  +S+GRMLVLT+ +PKP+  P      P +  ++      P  P +Q+ SD     
Subjt:  NKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFAS--KSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSD----S

Query:  ISLRPLGRTGTGAIAPSPI--PSLEKEKEIPPPPAVTLH-KPEKFVPPHLRAGFVGKEERP---------VNVGIRPREVNQRQ----YGNYGSPNRCAE
        ISLRPLG TG+ +    PI  P + K  E+  P  V+L  KP++FVPPHLR GFV K+E+P          N  +  R  NQ Q    Y  YG P     
Subjt:  ISLRPLGRTGTGAIAPSPI--PSLEKEKEIPPPPAVTLH-KPEKFVPPHLRAGFVGKEERP---------VNVGIRPREVNQRQ----YGNYGSPNRCAE

Query:  DGRPKSGGGYERMRGTVVNRPRSSGNRPSSS
         GRPKS GGYER+R      PR +GNRP +S
Subjt:  DGRPKSGGGYERMRGTVVNRPRSSGNRPSSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTC
TTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGC
CGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGC
GCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGC
GGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATG
GGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAACCAACAAATACACCTCCATCAATTTCAATCACATCTACGACAAGAATCTCTCCTCCAATTCCAAAACTGGCACTAATCTCTCCAAAAACCCCTCTTCTTC
TTCTTCTTCTTCTTCTTCATCTTTTGCTAGCAAGTCCCATGGCCGCATGCTCGTCCTGACCCGTCCTACCCCCAAACCCATCACCTTGCCTCCGGTTCTTTGCCCCCAGC
CGCAATCTCGACCCTCATCTGCCGATCATCGTGAGCTTCCGGATCGACCCCGTTCGCAATCTGGTTCTGATTCCATCTCTCTTCGCCCTCTCGGGCGGACTGGTACAGGC
GCGATCGCTCCGTCTCCGATTCCGAGCTTGGAGAAGGAGAAGGAGATTCCTCCTCCTCCGGCGGTGACGTTGCATAAACCGGAGAAATTTGTGCCGCCACATCTTAGGGC
GGGTTTCGTCGGGAAGGAGGAGAGACCTGTGAACGTTGGGATCCGACCTAGAGAGGTGAATCAGAGGCAGTATGGGAATTACGGGTCTCCAAATCGGTGTGCTGAAGATG
GGAGGCCGAAATCCGGCGGTGGGTATGAAAGGATGAGAGGGACGGTGGTGAATCGGCCACGTTCCAGCGGGAATCGCCCGAGTTCTAGTTGA
Protein sequenceShow/hide protein sequence
MAKTNKYTSINFNHIYDKNLSSNSKTGTNLSKNPSSSSSSSSSSFASKSHGRMLVLTRPTPKPITLPPVLCPQPQSRPSSADHRELPDRPRSQSGSDSISLRPLGRTGTG
AIAPSPIPSLEKEKEIPPPPAVTLHKPEKFVPPHLRAGFVGKEERPVNVGIRPREVNQRQYGNYGSPNRCAEDGRPKSGGGYERMRGTVVNRPRSSGNRPSSS