; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18050 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18050
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNucleic acid-binding, OB-fold containing protein
Genome locationCarg_Chr11:11947231..11948814
RNA-Seq ExpressionCarg18050
SyntenyCarg18050
Gene Ontology termsNA
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589134.1 hypothetical protein SDJN03_17699, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDL+KPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

XP_008455497.1 PREDICTED: uncharacterized protein At4g28440 [Cucumis melo]4.1e-6993.79Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

XP_022930657.1 uncharacterized protein At4g28440-like [Cucurbita moschata]3.9e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

XP_022988994.1 uncharacterized protein At4g28440-like [Cucurbita maxima]4.6e-73100Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

XP_038887250.1 uncharacterized protein At4g28440-like [Benincasa hispida]1.4e-6994.48Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

TrEMBL top hitse value%identityAlignment
A0A0A0K1C6 Uncharacterized protein3.3e-6993.79Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FE KEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

A0A1S3C119 uncharacterized protein At4g284402.0e-6993.79Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

A0A5A7UWS4 Uncharacterized protein2.0e-6993.79Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPA NAPAKRKPVF+KVE+LKPG+SGHTLTVKVVSSKNVKVVNKGGRS M TARPQQLTRISECLVGDETGSIVFTARNDQVD+MKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGR+EVAEPA+FEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

A0A6J1ER67 uncharacterized protein At4g28440-like1.9e-7299.31Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEV EDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

A0A6J1JN47 uncharacterized protein At4g28440-like2.2e-73100Show/hide
Query:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
        MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI
Subjt:  MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKI

Query:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
Subjt:  DMFKGSMRLAVDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

SwissProt top hitse value%identityAlignment
O49453 Uncharacterized protein At4g284401.0e-4669.92Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNV
        VDKWGRIE    A F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNV

Q97W73 Single-stranded DNA binding protein Ssb6.2e-0427.35Show/hide
Query:  KVEDLKPGSSGHTLTVKVVSSKNVK-VVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR
        KV +LKP      +TV+V+ +   + +  K G           +  ISE +VGDETG +  T        +K G  V + NA    FKG ++L  +   +
Subjt:  KVEDLKPGSSGHTLTVKVVSSKNVK-VVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAVDKWGR

Query:  IEVAEPADFEVKEDNNL
         ++AE ++    E + +
Subjt:  IEVAEPADFEVKEDNNL

Arabidopsis top hitse value%identityAlignment
AT1G10590.1 Nucleic acid-binding, OB-fold-like protein2.8e-4467.65Show/hide
Query:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRIEVA-EPADFEVKEDNNLSLVEYELVNVE
        AVD+WGR+EVA EP D  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRIEVA-EPADFEVKEDNNLSLVEYELVNVE

AT1G10590.3 Nucleic acid-binding, OB-fold-like protein2.8e-4467.65Show/hide
Query:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL
        A RKPVF KV +L+PG++GH+L VKVV++K V +   GGR   P +R     RI+ECLVGDETG I+FTARNDQVD+MK G+ VTLRNAKIDM+KGSMRL
Subjt:  AKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRL

Query:  AVDKWGRIEVA-EPADFEVKEDNNLSLVEYELVNVE
        AVD+WGR+EVA EP D  VK+DNNLSL+EYELV+VE
Subjt:  AVDKWGRIEVA-EPADFEVKEDNNLSLVEYELVNVE

AT1G23750.1 Nucleic acid-binding, OB-fold-like protein8.8e-4669.4Show/hide
Query:  RKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAV
        +KP F KV+ L+PG+SGH + VK+VS+   K+V + GR+  P AR     RISEC+VGDETG IVFTARNDQVDLMK G+TVTLRNAKIDM+KGSMRLAV
Subjt:  RKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLAV

Query:  DKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        DKWGR+EV EPA F+VKED N+SL+EYELVNV E
Subjt:  DKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

AT2G33845.1 Nucleic acid-binding, OB-fold-like protein9.4e-4873.33Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        K+KPVF+KV+ LKPG+SGHTLTVKVV   +V    K G ++    RP    RISECLVGDET  I+FTARNDQV+LMKPG TV LRNAKIDMFKGSMRLA
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE
        VDKWGRIE  EPAD  VKEDNNLSLVEYELVNV E
Subjt:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE

AT4G28440.1 Nucleic acid-binding, OB-fold-like protein7.2e-4869.92Show/hide
Query:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
        KRKPVF+KVE LKPG++GHTLTVKV+ +  V  V +  R A   +RP Q +RI ECL+GDETG I+FTARNDQVDLMKPG TV LRN++IDMFKG+MRL 
Subjt:  KRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA

Query:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNV
        VDKWGRIE    A F VKEDNNLSLVEYEL+NV
Subjt:  VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACGCCAGCAGTGAATGCCCCAGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAG
CTCCAAAAATGTTAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTT
CTATCGTCTTCACAGCTCGAAATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAGGGTTCTATGAGGTTAGCA
GTAGATAAATGGGGACGAATTGAAGTCGCTGAACCAGCCGACTTCGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
AATTAAATTCTTAGGGTTAGGGTTTTGATCCTCAGGTTCGATTTCATTCTCCATTTTCACGTTTCCCTTTCATCGGCGACAGGGTTTCGTTCTGTTACTTCGATTTCCAT
GGCGACGCCAGCAGTGAATGCCCCAGCAAAGAGGAAGCCTGTGTTTATTAAAGTTGAAGATCTAAAGCCTGGTTCGAGCGGCCACACTCTCACCGTGAAGGTCGTGAGCT
CCAAAAATGTTAAGGTTGTCAATAAAGGAGGACGATCCGCCATGCCTACGGCTCGCCCTCAGCAATTAACTCGCATCTCTGAATGTCTTGTTGGTGATGAGACTGGTTCT
ATCGTCTTCACAGCTCGAAATGACCAAGTTGATCTCATGAAGCCAGGAAACACTGTGACCCTGCGGAATGCTAAGATTGACATGTTCAAGGGTTCTATGAGGTTAGCAGT
AGATAAATGGGGACGAATTGAAGTCGCTGAACCAGCCGACTTCGAGGTTAAAGAGGACAACAATCTGTCACTGGTTGAGTATGAACTGGTTAATGTTGAAGAGTGACTTC
GAAGTATGCAGTGTTAATTTATCATGGATTTACTTTCTCTATTGTGTGGTGGACTGCTTTTTTACTGGTATACAGTTTTATATGGGAACACAAATCTTGCTGGAGGGTAA
TATAAGTTGACTATTGCTGTGACTACTAAGTGTTCTACCTGCTTAATTTGGGTCTGAATGTGATACAGATCTTGGAAGGCAAGGCCAAATGTTAATTTCTCTGCTTGTAT
TGGTTGGAAAAGTATATAGAAGGTTTTACTCATGGATCTTCGTTATGTTGCATCACTTGTCTAACTATGGTGACATTCAGCTAACTTCTTCATCAATTGTTTCCTTATCA
AAAGGTATACTGAGCTTTCATC
Protein sequenceShow/hide protein sequence
MATPAVNAPAKRKPVFIKVEDLKPGSSGHTLTVKVVSSKNVKVVNKGGRSAMPTARPQQLTRISECLVGDETGSIVFTARNDQVDLMKPGNTVTLRNAKIDMFKGSMRLA
VDKWGRIEVAEPADFEVKEDNNLSLVEYELVNVEE