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Carg18052 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18052
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr11:11935909..11936322
RNA-Seq ExpressionCarg18052
SyntenyCarg18052
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647336.1 hypothetical protein Csa_003380 [Cucumis sativus]9.2e-5585.07Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FGIDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI
        MMLAMANG+G LPVQMVLEEGSFLMKAVERE AI
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI

KAG6589131.1 hypothetical protein SDJN03_17696, partial [Cucurbita argyrosperma subsp. sororia]9.4e-68100Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

XP_022930659.1 uncharacterized protein LOC111437060 [Cucurbita moschata]2.7e-6799.27Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

XP_022989004.1 uncharacterized protein LOC111486198 [Cucurbita maxima]1.2e-6597.81Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAFGA IGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

XP_023529816.1 uncharacterized protein LOC111792530 [Cucurbita pepo subsp. pepo]6.1e-6798.54Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

TrEMBL top hitse value%identityAlignment
A0A0A0KHT7 Uncharacterized protein4.4e-5585.07Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FGIDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI
        MMLAMANG+G LPVQMVLEEGSFLMKAVERE AI
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI

A0A5D3E445 Calcium-binding EF-hand family protein1.3e-5484.33Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTNHDGLLS+SEML+EL +LRV E  FGIDVKPDP+ELSSVYSS+FLQFD +SSGTVDLDEFKAE KR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI
        MML MANG+G LPVQMVLEEGSFLMKAVERE AI
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAI

A0A6J1C5B4 uncharacterized protein LOC1110075321.3e-5484.44Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAF A I DRFAHLDTNHDGLLS++EML+ELQSLRV E  FGIDVKPDPDELS+VYSS+FLQFD +SSG VDLDEFKAE KR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIM
        MMLA ANG+G LPVQMVLEEGSFLMKAVERE  IM
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIM

A0A6J1ES35 uncharacterized protein LOC1114370601.3e-6799.27Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

A0A6J1JN55 uncharacterized protein LOC1114861985.6e-6697.81Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        MSVE+LDSATIVNFVEDEAAFGA IGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
        MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT
Subjt:  MMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54530.1 Calcium-binding EF hand family protein3.6e-0931.5Show/hide
Query:  MLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLA
        ++ S T++ F+ D  +F +   D F  LD + +G+LS SE+ + L ++  +E+    +V P  DE  +VY+++F +F  +    +    F+     ++ A
Subjt:  MLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLA

Query:  MANGIGALPVQMVLEEGSFLMKAVERE
        MA GIG  PV MV+     +MKAV  E
Subjt:  MANGIGALPVQMVLEEGSFLMKAVERE

AT2G44310.1 Calcium-binding EF-hand family protein3.2e-2944.44Show/hide
Query:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR
        M V ++D +T+ +FV+DE  F   + +RFA LD N DG+LS SE+ K  +S+R++E+ FG+DV    DEL+++Y S+F +FD + SG+VDL+EF++E K+
Subjt:  MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKR

Query:  MMLAMANGIGALPVQMVL--EEGSFLMKAVEREVA
        ++LA+A+G+G+ P+ MVL  ++ +FL KA + E +
Subjt:  MMLAMANGIGALPVQMVL--EEGSFLMKAVEREVA

AT4G38810.2 Calcium-binding EF-hand family protein9.0e-0828Show/hide
Query:  EMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMML
        ++LD + IV  VE+E  F   +  +F  LD + DG LS +E+   +     I A  G+  +    +   +YS +  +F   S   V   EFK     ++L
Subjt:  EMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMML

Query:  AMANGIGALPVQMVLEEGSFLMKAV
         MA G+   P+ ++  +G  L + V
Subjt:  AMANGIGALPVQMVLEEGSFLMKAV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTGGAGATGTTGGACAGTGCCACCATTGTCAACTTTGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGA
CGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCT
ATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGA
GCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTGGAGATGTTGGACAGTGCCACCATTGTCAACTTTGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGA
CGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCT
ATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGA
GCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA
Protein sequenceShow/hide protein sequence
MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIG
ALPVQMVLEEGSFLMKAVEREVAIMTT