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Carg18053 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18053
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr11:11932251..11934375
RNA-Seq ExpressionCarg18053
SyntenyCarg18053
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8645727.1 hypothetical protein Csa_020381 [Cucumis sativus]1.0e-6769.85Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEIL+ ATI+NFVED+E F   +RERFSHLDID DGVL Y EML+ELQSLRV ETHFGID KPDP ELSSVYGSLFLQFDRD +GKVD+GEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVE-RESTKV-----DEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVY
        MM+AMANGIG SPVQM+LEEN L K +VE  + T +     DE AF+  IR +F+HLD D D +LSY EML ELQ +R+F+  FG D KL P+ELSSVY
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVE-RESTKV-----DEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVY

KAG6589130.1 hypothetical protein SDJN03_17695, partial [Cucurbita argyrosperma subsp. sororia]3.6e-6597.78Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRD +GKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

KAG7022829.1 hypothetical protein SDJN02_16565, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-102100Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVYG
        MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVYG
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVYG

XP_022989006.1 uncharacterized protein LOC111486199 [Cucurbita maxima]1.6e-6597.04Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDG+TIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIGFSPVQMVLEENS LK+AVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

XP_023529817.1 uncharacterized protein LOC111792531 [Cucurbita pepo subsp. pepo]2.8e-6597.04Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRDR+GKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIGFSPVQMVLEENS LK+AVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

TrEMBL top hitse value%identityAlignment
A0A0A0K1Y0 Calcium ion binding protein1.5e-5380.74Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEIL+ ATI+NFVED+E F   +RERFSHLDID DGVL Y EML+ELQSLRV ETHFGID KPDP ELSSVYGSLFLQFDRD +GKVD+GEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MM+AMANGIG SPVQM+LEENS LK+AV+RESTK+
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

A0A6J1C2G7 uncharacterized protein LOC1110078499.1e-5480.74Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVE+LDGATIV+FVED+EVFGA V+ERFSHLD D DGVLSY EMLRELQSLRV ETHFGIDVKPDP+E+S+VYGSLFL FDRD +GKVD+GEFM ETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MM+AMANGIG  P+QMVLEEN  LK+AVERE+TK+
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

A0A6J1EXF9 uncharacterized protein LOC1114370611.5e-6496.3Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILD ATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRD DGKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIGFSPVQMVLEENS LK+AVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

A0A6J1JEK7 uncharacterized protein LOC1114862005.1e-6597.04Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDID DGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIG SPVQMVLEENSLLK+AVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

A0A6J1JIT4 uncharacterized protein LOC1114861997.9e-6697.04Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        MSVEILDG+TIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDP+ELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV
        MMVAMANGIGFSPVQMVLEENS LK+AVERESTKV
Subjt:  MMVAMANGIGFSPVQMVLEENSLLKRAVERESTKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54530.1 Calcium-binding EF hand family protein9.4e-1132.03Show/hide
Query:  ILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMMVA
        ++   T++ F+ D + F +I  + F  LD+D +G+LS  E+ + L ++   E+    +V P  +E  +VY ++F +F  D   K     F +   +++ A
Subjt:  ILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMMVA

Query:  MANGIGFSPVQMVLEENSLLKRAVERES
        MA GIG SPV MV+  + L+ +AV  ES
Subjt:  MANGIGFSPVQMVLEENSLLKRAVERES

AT2G44310.1 Calcium-binding EF-hand family protein3.4e-2942.45Show/hide
Query:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK
        M V ++DG+T+ +FV+D+E F   V ERF+ LD++ DGVLS  E+ +  +S+R+ E+HFG+DV    +EL+++Y S+F +FD D+ G VD+ EF  E KK
Subjt:  MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKK

Query:  MMVAMANGIGFSPVQMVL--EENSLLKRAVERESTKVDE
        +++A+A+G+G  P+ MVL  ++++ LK+A + E++K+++
Subjt:  MMVAMANGIGFSPVQMVL--EENSLLKRAVERESTKVDE

AT4G38810.2 Calcium-binding EF-hand family protein4.4e-0825.64Show/hide
Query:  EILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMMV
        ++LDG+ IV  VE+++VF   V ++F  LD D DG LS  E+   +  +       G+  +    +   +Y  +  +F      KV   EF E    +++
Subjt:  EILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMMV

Query:  AMANGIGFSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVL
         MA G+   P+ ++  +   L   V     ++  E+ S      FS L   +D+ L
Subjt:  AMANGIGFSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVL

AT5G28830.1 calcium-binding EF hand family protein2.0e-0524.14Show/hide
Query:  VEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMM
        V ILDG  +  F+ED++ F  +    F+ LD +  G L   E+ + L        H G+++   P     +   +  + D D D ++   +F E  ++++
Subjt:  VEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMM

Query:  VAMANGIGFSPVQMVL
          +A+ +   P+ +VL
Subjt:  VAMANGIGFSPVQMVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAGAAATTTTGGACGGTGCCACCATTGTCAACTTTGTGGAAGATGACGAAGTTTTTGGTGCAATAGTTCGAGAGCGTTTCAGTCACCTTGATATCGATGGAGA
TGGGGTTCTTTCTTATGAAGAGATGTTAAGGGAGTTGCAAAGTCTTAGGGTGTTCGAAACGCACTTCGGAATCGATGTGAAACCTGACCCGGAAGAACTCTCTTCTGTTT
ATGGCTCGTTATTTCTGCAATTTGATCGAGACCGCGATGGGAAAGTTGATGTTGGTGAGTTCATGGAAGAAACCAAGAAGATGATGGTGGCAATGGCGAATGGAATAGGG
TTTTCGCCGGTTCAAATGGTGTTGGAAGAGAATAGTCTTTTGAAGAGAGCGGTGGAGAGAGAATCCACCAAAGTTGATGAAGAAGCCTTTAGCACGACGATTCGAGAGCG
TTTTAGTCACCTCGACATCGACAGAGACAGCGTTCTTTCGTATGGAGAGATGCTTAGGGAACTGCAGGGTGTTAGGATGTTTGAGACCCATTTTGGAATTGATGTGAAAC
TTGACCCAAATGAGCTTTCTTCTGTGTATGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAGAAATTTTGGACGGTGCCACCATTGTCAACTTTGTGGAAGATGACGAAGTTTTTGGTGCAATAGTTCGAGAGCGTTTCAGTCACCTTGATATCGATGGAGA
TGGGGTTCTTTCTTATGAAGAGATGTTAAGGGAGTTGCAAAGTCTTAGGGTGTTCGAAACGCACTTCGGAATCGATGTGAAACCTGACCCGGAAGAACTCTCTTCTGTTT
ATGGCTCGTTATTTCTGCAATTTGATCGAGACCGCGATGGGAAAGTTGATGTTGGTGAGTTCATGGAAGAAACCAAGAAGATGATGGTGGCAATGGCGAATGGAATAGGG
TTTTCGCCGGTTCAAATGGTGTTGGAAGAGAATAGTCTTTTGAAGAGAGCGGTGGAGAGAGAATCCACCAAAGTTGATGAAGAAGCCTTTAGCACGACGATTCGAGAGCG
TTTTAGTCACCTCGACATCGACAGAGACAGCGTTCTTTCGTATGGAGAGATGCTTAGGGAACTGCAGGGTGTTAGGATGTTTGAGACCCATTTTGGAATTGATGTGAAAC
TTGACCCAAATGAGCTTTCTTCTGTGTATGGCTGA
Protein sequenceShow/hide protein sequence
MSVEILDGATIVNFVEDDEVFGAIVRERFSHLDIDGDGVLSYEEMLRELQSLRVFETHFGIDVKPDPEELSSVYGSLFLQFDRDRDGKVDVGEFMEETKKMMVAMANGIG
FSPVQMVLEENSLLKRAVERESTKVDEEAFSTTIRERFSHLDIDRDSVLSYGEMLRELQGVRMFETHFGIDVKLDPNELSSVYG