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Carg18054 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18054
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCalcium-binding EF-hand family protein
Genome locationCarg_Chr11:11911085..11911432
RNA-Seq ExpressionCarg18054
SyntenyCarg18054
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589126.1 hypothetical protein SDJN03_17691, partial [Cucurbita argyrosperma subsp. sororia]1.4e-5197.32Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
        MSVELLDSATVVSFVEDEEAFGAAIRERFR LDVDGDGALSYTEMLKEFGSDEVCC YE+ESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL

Query:  LMKAVQREAAAM
        LMKAVQREAAAM
Subjt:  LMKAVQREAAAM

KAG7022828.1 hypothetical protein SDJN02_16564, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-54100Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
        MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL

Query:  LMKAVQREAAAMVDA
        LMKAVQREAAAMVDA
Subjt:  LMKAVQREAAAMVDA

XP_008455505.1 PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo]1.0e-2757.58Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK
        MSVELLD AT+V+FVEDEEAF    RE F RLD D DG LSY EMLKEF                 +DE+   Y       + +S+GKVD+++FM GMK 
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA
        MM+AIAEG+GFLPI MAL+KDG LMKAVQREA
Subjt:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA

XP_022930694.1 uncharacterized protein LOC111437091 [Cucurbita moschata]1.1e-5398.26Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
        MSVELLDSATVVSFVEDEEAFGAAIRERFR LDVDGDGALSYTEMLKEFGSDEVCCAYE+ESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL

Query:  LMKAVQREAAAMVDA
        LMKAVQREAAAMVDA
Subjt:  LMKAVQREAAAMVDA

XP_038887184.1 uncharacterized protein LOC120077371 [Benincasa hispida]1.2e-2858.33Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKE----------FGSD-------------EVCCAYESESNGKVDLEKFMRGMKK
        MSVELLD AT+V+FVEDEEAF    RE F  LD DGDG LSY EMLKE          FG+D              V   ++ +SNGKVD+++FM GMK 
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKE----------FGSD-------------EVCCAYESESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA
        MM+AIAEG+GFLPI MAL+KDG LMKAVQREA
Subjt:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA

TrEMBL top hitse value%identityAlignment
A0A1S3C0M6 uncharacterized protein LOC1034956565.1e-2857.58Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK
        MSVELLD AT+V+FVEDEEAF    RE F RLD D DG LSY EMLKEF                 +DE+   Y       + +S+GKVD+++FM GMK 
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA
        MM+AIAEG+GFLPI MAL+KDG LMKAVQREA
Subjt:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA

A0A438IL73 EF-hand domain-containing protein7.6e-2456.25Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
        MSVE+LD AT+VSFVED+EAF   I  RF  LD + DG LSY EMLKEF S      ++ ++NG VDLE+F +  K+MM+A+A GLGFLP+ M L++D  
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL

Query:  LMKAVQREAAAM
        L KAV+REA  M
Subjt:  LMKAVQREAAAM

A0A5A7UY59 Uncharacterized protein5.1e-2857.58Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK
        MSVELLD AT+V+FVEDEEAF    RE F RLD D DG LSY EMLKEF                 +DE+   Y       + +S+GKVD+++FM GMK 
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEF----------------GSDEVCCAY-------ESESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA
        MM+AIAEG+GFLPI MAL+KDG LMKAVQREA
Subjt:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQREA

A0A6J1C2T1 uncharacterized protein LOC1110077411.9e-2755.73Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKE----------FGSD-------------EVCCAYESESNGKVDLEKFMRGMKK
        MSVE+LDSAT+++FVEDEEAFGA IRERFR LD D DG LSY EML+E          FG D              V   ++  SNG+VDLE+FM G K+
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKE----------FGSD-------------EVCCAYESESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQRE
        +M+AIAEG+GFLP+ MAL++DG LMKAV+ E
Subjt:  MMMAIAEGLGFLPIHMALQKDGLLMKAVQRE

A0A6J1ES74 uncharacterized protein LOC1114370915.4e-5498.26Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
        MSVELLDSATVVSFVEDEEAFGAAIRERFR LDVDGDGALSYTEMLKEFGSDEVCCAYE+ESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGL

Query:  LMKAVQREAAAMVDA
        LMKAVQREAAAMVDA
Subjt:  LMKAVQREAAAMVDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54530.1 Calcium-binding EF hand family protein4.1e-0626.89Show/hide
Query:  LLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGS-----DEVCCAYESESNGKVDLEKFMRGM---------KKMMMAIAEGLGFLP
        ++ S T++ F+ D ++F +   + F+ LD+D +G LS +E+ +   +      EV    E+++      E+F   +          +++ A+A G+G  P
Subjt:  LLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGS-----DEVCCAYESESNGKVDLEKFMRGM---------KKMMMAIAEGLGFLP

Query:  IHMALQKDGLLMKAVQREA
        + M +  DGL+MKAV  E+
Subjt:  IHMALQKDGLLMKAVQREA

AT2G44310.1 Calcium-binding EF-hand family protein4.4e-1640Show/hide
Query:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGS----------------DEVCCAYES-------ESNGKVDLEKFMRGMKK
        M V L+D +TV SFV+DEE F  ++ ERF  LD++ DG LS +E+ K F S                DE+   Y+S       + +G VDLE+F   MKK
Subjt:  MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGS----------------DEVCCAYES-------ESNGKVDLEKFMRGMKK

Query:  MMMAIAEGLGFLPIHMAL--QKDGLLMKAVQREAAAMVDA
        +++AIA+GLG  PI M L    D  L KA   EA+ +  A
Subjt:  MMMAIAEGLGFLPIHMAL--QKDGLLMKAVQREAAAMVDA

AT4G38810.2 Calcium-binding EF-hand family protein2.3e-0427.59Show/hide
Query:  ELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEM---LKEFGS-----------------DEVCCAYESESNGKVDLEKFMRGMKKMMMAIA
        ++LD + +V  VE+E+ F   + ++F++LD D DG LS TE+   + + G+                  EV   +   S  KV   +F   +  +++ +A
Subjt:  ELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEM---LKEFGS-----------------DEVCCAYESESNGKVDLEKFMRGMKKMMMAIA

Query:  EGLGFLPIHMALQKDG
         GL   PI + L+ DG
Subjt:  EGLGFLPIHMALQKDG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAGAATTACTAGACAGCGCCACCGTAGTGAGCTTCGTGGAGGACGAGGAAGCCTTCGGCGCCGCCATTAGGGAGCGTTTCAGGCGCCTCGATGTGGACGGCGA
TGGCGCGCTGTCGTACACAGAGATGTTGAAGGAGTTTGGAAGCGATGAGGTTTGTTGTGCGTACGAAAGTGAGTCGAATGGAAAAGTTGATTTGGAGAAGTTCATGAGGG
GAATGAAGAAGATGATGATGGCCATTGCTGAGGGATTAGGGTTCTTGCCGATTCATATGGCGCTGCAAAAAGATGGGTTGTTGATGAAAGCTGTTCAGAGAGAAGCCGCT
GCCATGGTAGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAGAATTACTAGACAGCGCCACCGTAGTGAGCTTCGTGGAGGACGAGGAAGCCTTCGGCGCCGCCATTAGGGAGCGTTTCAGGCGCCTCGATGTGGACGGCGA
TGGCGCGCTGTCGTACACAGAGATGTTGAAGGAGTTTGGAAGCGATGAGGTTTGTTGTGCGTACGAAAGTGAGTCGAATGGAAAAGTTGATTTGGAGAAGTTCATGAGGG
GAATGAAGAAGATGATGATGGCCATTGCTGAGGGATTAGGGTTCTTGCCGATTCATATGGCGCTGCAAAAAGATGGGTTGTTGATGAAAGCTGTTCAGAGAGAAGCCGCT
GCCATGGTAGATGCTTGA
Protein sequenceShow/hide protein sequence
MSVELLDSATVVSFVEDEEAFGAAIRERFRRLDVDGDGALSYTEMLKEFGSDEVCCAYESESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGLLMKAVQREAA
AMVDA