CuGenDBv2

Gene ID	Carg18114
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Pentatricopeptide repeat (PPR) superfamily protein
Genome location	Carg_Chr11:11589254..11593504
RNA-Seq Expression	Carg18114
Synteny	Carg18114
Gene Ontology terms	GO:0005635 - nuclear envelope (cellular component) GO:0005739 - mitochondrion (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	IPR029159 - Casein Kinase 2 substrate IPR038985 - At5g43822-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6589056.1 hypothetical protein SDJN03_17621, partial [Cucurbita argyrosperma subsp. sororia]

3.2e-89

93.58

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGNTVRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

KAG7022770.1 hypothetical protein SDJN02_16506, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-119

100

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Query:  MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALL
        MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALL
Subjt:  MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALL

Query:  AKQMESEELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLV
        AKQMESEELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLV
Subjt:  AKQMESEELGNTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLV

Query:  DQPNIRKEEVEFIFDTILVPEAS
        DQPNIRKEEVEFIFDTILVPEAS
Subjt:  DQPNIRKEEVEFIFDTILVPEAS

XP_022928127.1 uncharacterized protein At5g43822 isoform X3 [Cucurbita moschata]

7.8e-96

93.03

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

XP_022989465.1 uncharacterized protein At5g43822 isoform X2 [Cucurbita maxima]

3.6e-93

90.55

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

XP_023529794.1 uncharacterized protein At5g43822 [Cucurbita pepo subsp. pepo]

2.2e-90

90.05

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Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDP NYGSLS   GIVDALLAKQMES             ELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVS+LPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EJ12 uncharacterized protein At5g43822 isoform X3

3.8e-96

93.03

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

A0A6J1EJF6 uncharacterized protein At5g43822 isoform X2

2.2e-88

92.51

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

A0A6J1EQT0 uncharacterized protein At5g43822 isoform X1

2.2e-88

92.51

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

A0A6J1JMF9 uncharacterized protein At5g43822 isoform X2

1.8e-93

90.55

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEF+FD ILVPEA
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPEA

Query:  S
        S
Subjt:  S

A0A6J1JQC0 uncharacterized protein At5g43822 isoform X1

9.3e-87

90.91

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD
        MEAMVKKYQQRFRKFKDEMD WDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES            EELGN VRSMEKIYRD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMES------------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
        GKQLIKGGSNQPSTKQLQQRVGLKPSL+DCLNGLRLLCDMHRSEY+LKESMVSALP+LFWKPRNHSAQDLSSLQQLLVDQPNIRKEE
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEE

SwissProt top hits

e value

%identity

Alignment

Q6NPG7 Uncharacterized protein At5g43822

1.3e-40

48.24

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQM---ES---------EELGNTVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + GI DA++ +QM   ES         EE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQM---ES---------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL      + S +++++R+G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Arabidopsis top hits

e value

%identity

Alignment

AT5G43822.1 Pentatricopeptide repeat (PPR) superfamily protein

9.0e-42

48.24

Show/hide

Query:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQM---ES---------EELGNTVRSMEKIYRD
        MEA+++K+QQ+FRK K+EM++W+ LQVR +S F NASSII RLQ +Q+  +YG+L  + GI DA++ +QM   ES         EE    V + EK++RD
Subjt:  MEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQM---ES---------EELGNTVRSMEKIYRD

Query:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE
        G QL      + S +++++R+G+KP + DCL GL +L DMH+SEYHLK S++S L  L  KP   S  DL++LQ L+VDQPNI K+EV+ IFD I   E
Subjt:  GKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVPE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

mRNA sequence

Show/hide mRNA sequence

ATGCTAAAAAGCAAGAAGCTTGAAGAGGAAGGGAAGTGGGCACTGAGCTTTGTGGTGTTAGAAATTTGCAGGCATTATCAAAGTACCCTAAAATTCCAATCAATGGAGGC
CATGGTGAAAAAGTATCAGCAAAGATTCAGAAAGTTCAAAGATGAAATGGATCGCTGGGACGAGCTTCAAGTTCGCTTGATTTCACAGTTCACGAACGCTTCCTCCATCA
TTGGGAGGTTGCAGGTGCTTCAAGATCCTAACAATTATGGCAGTCTGTCTGGTATGGATGGCATTGTAGATGCGCTTTTGGCTAAGCAGATGGAATCGGAAGAACTTGGG
AATACTGTCCGTTCAATGGAGAAGATTTATCGTGATGGGAAGCAATTAATCAAAGGTGGTTCGAATCAGCCATCAACGAAACAACTGCAACAAAGAGTTGGATTAAAACC
GAGTCTTGACGATTGCTTGAACGGGTTAAGGCTTCTATGTGACATGCACCGCTCTGAGTACCATCTTAAAGAATCTATGGTCTCAGCACTTCCAGAACTTTTCTGGAAAC
CCAGGAATCATAGTGCCCAAGATCTCAGTTCCTTACAGCAACTTTTGGTTGATCAGCCTAACATTCGGAAAGAGGAAGTTGAATTTATCTTTGATACCATACTGGTTCCG
GAAGCTAGCTAAAATGATGAGATAATCAAACAGTTCAAGAACATTTGATTGCATCTACATGCCTTCTTCTAAGGAAGAATTTGTATTCTTGCAATGGCAAGAAATTTTCA
GGAAGAGGAAGCTTCAAGGATATTTACCTTGTGAGAATACAACACCAACAATATCAATTGAAAAGCAAAGTAGTGTCGGTGTTCATCTCTATTCCCCCCGGTAGTAGTGC
ATTTGACATTTTGGCCGATTATATGATTTAATCAGTTGAGTTATGTTGAGGTTAAATTTATGTTTTACTAGTGAGATTTTTTTATAATCTTTTTAGTTTTATGAACACAC
CATTAGTTTCAACAATATTCGTCGATGGTACATGACTACTACCACTGTGCCAAGCTTACTTTGACGTGTATTAAGATACGACATAGAGACGACTCATCTACCATTACCAA
CCGGTGTGGTATTGCTTCCCATCCTTCTTCACGATCGTAGGTAGTAGGTTAGCAGGTTAGAGGAAGGAGATGAAGTAAAAGAACAAGGATGTTTTTGCCTGTAGACATAT
AAATGTGAAGCCTTTTGATGTGAGTTTCTGAAATGCAATGGTAAGAATGAATATTGGTGCACTTGCACTCATCTCTTGTATTTCGACCCTTTTGATTATAATAGAACTTT
TTGGCCATAATTTTCAGGG

Protein sequence

Show/hide protein sequence

MLKSKKLEEEGKWALSFVVLEICRHYQSTLKFQSMEAMVKKYQQRFRKFKDEMDRWDELQVRLISQFTNASSIIGRLQVLQDPNNYGSLSGMDGIVDALLAKQMESEELG
NTVRSMEKIYRDGKQLIKGGSNQPSTKQLQQRVGLKPSLDDCLNGLRLLCDMHRSEYHLKESMVSALPELFWKPRNHSAQDLSSLQQLLVDQPNIRKEEVEFIFDTILVP
EAS

Carg18114 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome