; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18132 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18132
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRibosomal RNA-processing protein 40
Genome locationCarg_Chr11:553581..556444
RNA-Seq ExpressionCarg18132
SyntenyCarg18132
Gene Ontology termsGO:0000467 - exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) (biological process)
GO:0034427 - nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5' (biological process)
GO:0034475 - U4 snRNA 3'-end processing (biological process)
GO:0043928 - exonucleolytic catabolism of deadenylated mRNA (biological process)
GO:0071034 - CUT catabolic process (biological process)
GO:0071035 - nuclear polyadenylation-dependent rRNA catabolic process (biological process)
GO:0071038 - nuclear polyadenylation-dependent tRNA catabolic process (biological process)
GO:0071051 - polyadenylation-dependent snoRNA 3'-end processing (biological process)
GO:0000176 - nuclear exosome (RNase complex) (cellular component)
GO:0000177 - cytoplasmic exosome (RNase complex) (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR004088 - K Homology domain, type 1
IPR012340 - Nucleic acid-binding, OB-fold
IPR026699 - Exosome complex RNA-binding protein 1/RRP40/RRP4
IPR036612 - K Homology domain, type 1 superfamily
IPR037319 - Rrp40, S1 domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6587472.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]2.8e-131100Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

KAG6589448.1 Protein KINESIN LIGHT CHAIN-RELATED 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-12594.65Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

KAG7023129.1 putative exosome complex component rrp40, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-12594.65Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

XP_022925902.1 putative exosome complex component rrp40 [Cucurbita moschata]2.8e-131100Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

XP_022973376.1 putative exosome complex component rrp40 [Cucurbita maxima]2.6e-12998.77Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFG LKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

TrEMBL top hitse value%identityAlignment
A0A0A0LP58 Ribosomal RNA-processing protein 401.0e-12393.83Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEK SSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQD DAISV+KVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIV+DSR+DNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSP+CPVLESLGKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPST IVVSNAI+NSETLSGVQQRIMVDKLL NLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1E1A1 Ribosomal RNA-processing protein 401.1e-12594.24Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NET+KLGGGLRQDHDAISV+KVGKLRFSKPNKYWVESSQKRYVPC EDCVLGIVVDSR+DNFLVDIKGP+
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAI+NSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1ECW1 Ribosomal RNA-processing protein 401.4e-131100Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1I8H3 Ribosomal RNA-processing protein 401.3e-12998.77Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFG LKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

A0A6J1JLH7 Ribosomal RNA-processing protein 405.5e-12593.83Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        MVEKSSSSSS LVDQPVVPGDVVLDLSNM NETIKLGGGLRQDHDAISV+KVGKLRF+KPNKYWVESSQKRYVPC EDCVLGIVVDSRSDNFLVDIKGP+
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFEMGALLYVRVVK NPGMNPELACTDASGKAAGFGLLKDGY+F+CSTGLSRMLLSSPTCPVLES GKKLSFETAVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS
        WVNADSPSTTIVVSNA++NSETLSGVQQRIMVD LLNNLKLSS
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNLKLSS

SwissProt top hitse value%identityAlignment
Q3T0E1 Exosome complex component RRP403.2e-3740.29Show/hide
Query:  GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRV
        G GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   ASL  LAFEG T+RN P  ++G L+Y + 
Subjt:  GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRV

Query:  VKVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQR
        V  N  M PE+ C D+ G+A G G++ +DG +F  + GL R LL +P C +L+ +GK    E   G+NGR+WV A +   T++++N +   E ++  Q++
Subjt:  VKVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQR

Query:  IMVDKL
         +  +L
Subjt:  IMVDKL

Q7KWX9 Putative exosome complex component rrp402.4e-4543.61Show/hide
Query:  LVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFE
        L DQ VVPGDV+  + ++    +++G GL Q  D +   K G LR+SK ++ YW+E+ QKRYVP  ED V+G +++  +++F VDI     A L   +FE
Subjt:  LVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNK-YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFE

Query:  GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTT
        G T+ N P   +G L+Y RV   N  M PE+ C     KA GFG L  GY+ +CS GLS  LLS   C +L+ LGK + +E AVG+NGRVW+N+ S   T
Subjt:  GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTT

Query:  IVVSNAIMNSETLSGVQQRIMVDKLLN
        IVVSN I NS+ +   Q    + K L+
Subjt:  IVVSNAIMNSETLSGVQQRIMVDKLLN

Q7TQK4 Exosome complex component RRP402.4e-3740.49Show/hide
Query:  GGGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVV
        G GLR+  D + V K G+LR  +P+      YWV+S QKRYVP   D V+GIV+    D F VD+ G   ASL  LAFEG T+RN P  ++G L+Y + V
Subjt:  GGGLRQDHDAISVAKVGKLRFSKPN-----KYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRVV

Query:  KVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRI
          N  M PE+ C D+ G+A G G++ +DG +F  + GL R LL +P C +++ LGK    E   G+NGR+WV A +   T++++N +   E ++  Q++ 
Subjt:  KVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQRI

Query:  MVDKL
        +  +L
Subjt:  MVDKL

Q8IPX7 Exosome complex component RRP405.3e-4038.84Show/hide
Query:  VVPGDVVLDLSNMT-NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRR
        V+PG+ +  +  +  ++ + LG GLR+  D +  +K G LR  +P  +WV++ Q+RY+P   D +LGIV     D + VDI     AS+  LAFE  +++
Subjt:  VVPGDVVLDLSNMT-NETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRR

Query:  NIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSN
        N P    G L+Y RV+  +  + PEL C ++ GK+   G+L DG+ F CS  L RMLL    CPVL +L ++L +E AVG+NGR+W+ A S   T+ ++N
Subjt:  NIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSN

Query:  AIMNSETLSGVQQRIMVDKLLNNL
        AI   E  SG  +   +DK+  NL
Subjt:  AIMNSETLSGVQQRIMVDKLLNNL

Q9NQT5 Exosome complex component RRP401.2e-3639.32Show/hide
Query:  GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRV
        G GLR+  D + V K G+LR  +P        YWV+S QKRYVP   D V+GIV     D F VD+ G   ASL  L+FEG T+RN P  ++G L+Y + 
Subjt:  GGGLRQDHDAISVAKVGKLRFSKPNK------YWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYVRV

Query:  VKVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQR
        V  N  M PE+ C D+ G+A G G++ +DG +F  + GL R LL +P C +++ +GK    E   G+NGR+WV A +   T++++N +   E ++  Q++
Subjt:  VKVNPGMNPELACTDASGKAAGFGLL-KDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQR

Query:  IMVDKL
         +  +L
Subjt:  IMVDKL

Arabidopsis top hitse value%identityAlignment
AT2G25355.1 PNAS-3 related2.4e-9673.08Show/hide
Query:  SSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLP
        S+S + L+DQ VVPGDVVLDLSNMTN+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LP
Subjt:  SSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLP

Query:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNAD
        VLAFEG  RRN PKFE+  LLY RVVK N GMNPEL+C D SGKAAGFG LKDG++F+ STGLSRMLLSSPTCPVLE+LGKKLSFETA G+NGR WV+A 
Subjt:  VLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNAD

Query:  SPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNL
        +P   I+V+NA+MNSETLSG QQRIMV+KLL  +
Subjt:  SPSTTIVVSNAIMNSETLSGVQQRIMVDKLLNNL

AT2G25355.2 PNAS-3 related3.5e-8772.99Show/hide
Query:  MTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV
        MTN+TIKLG GLRQD++ ISV + GKLR+SKPNKYWVESS KRYVP  ED VLGIVVD + +N+ +DIKGP LA LPVLAFEG  RRN PKFE+  LLY 
Subjt:  MTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFEGGTRRNIPKFEMGALLYV

Query:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQ
        RVVK N GMNPEL+C D SGKAAGFG LKDG++F+ STGLSRMLLSSPTCPVLE+LGKKLSFETA G+NGR WV+A +P   I+V+NA+MNSETLSG QQ
Subjt:  RVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNSETLSGVQQ

Query:  RIMVDKLLNNL
        RIMV+KLL  +
Subjt:  RIMVDKLLNNL

AT4G32175.1 PNAS-3 related9.1e-9673.73Show/hide
Query:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS
        M  K S S + L++Q VVPGDVVLDLSNM N+TIKLG GL QD+DAIS  + GKL +SKPNKYW+ESS KRY+P  +D VLGIVVDSR+DNF VDIKGP 
Subjt:  MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPS

Query:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV
        LA LPVLAFEGGTRRNIPKFE+G LLY+RVVK N GMNPEL+CT+ASGKAA FG L+DG++F+ STGLSRMLL+SPT PV+E+LGKKLSFE AVG+NGRV
Subjt:  LASLPVLAFEGGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRV

Query:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLL
        WVNA +P   I+V+NAIMNSE+LSG QQRIMV+KLL
Subjt:  WVNADSPSTTIVVSNAIMNSETLSGVQQRIMVDKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGAAAAATCTTCTAGTTCGTCATCTATTCTGGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTACTCGACCTCTCAAACATGACCAACGAAACCATCAAGCTTGG
AGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCGCTAAAGTTGGAAAATTGAGGTTCTCAAAACCAAACAAATATTGGGTTGAAAGCTCGCAGAAAAGGTATGTGC
CATGTGCAGAAGATTGCGTACTTGGAATCGTGGTTGACTCTAGATCCGATAATTTTCTTGTTGACATAAAAGGTCCTTCATTGGCCTCTCTTCCTGTTCTTGCATTTGAA
GGAGGAACAAGACGAAACATTCCCAAGTTCGAGATGGGTGCCCTTCTTTATGTGCGGGTGGTGAAGGTAAACCCTGGTATGAATCCCGAGCTGGCATGCACTGATGCTAG
TGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATCTTTGACTGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCTGTTCTTGAATCTC
TTGGGAAGAAGCTTTCATTCGAGACGGCAGTTGGTATAAATGGCCGAGTTTGGGTCAATGCAGATTCCCCGTCCACAACCATTGTTGTTTCTAATGCAATAATGAACTCA
GAAACTCTGAGTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTAAATAATTTAAAGCTATCAAGTTAA
mRNA sequenceShow/hide mRNA sequence
TATTTTTTTTTATTTTTATTATTCACAAATCAAAATAAAAATTGATACAACAATGAAAAATAAATATTTTTTTTCGAATATATTAATTACCCTCGAAACCATTCGGTCTG
CCTCGTTCGCGCGTATTACTTTCTCTTTCGTGTTCATTGCTCTCGCCCACTGGATAGGTTTCTTTCTTCCACTCACAATTCCTCCGGTCGCTAACTGTTACAACATCTCG
TTTGCTTCGTGGAAGGGATTGTACCTGTAACTATGGTTGAAAAATCTTCTAGTTCGTCATCTATTCTGGTTGATCAGCCAGTTGTTCCAGGAGATGTGGTACTCGACCTC
TCAAACATGACCAACGAAACCATCAAGCTTGGAGGCGGTCTTCGACAGGACCATGATGCTATTTCTGTCGCTAAAGTTGGAAAATTGAGGTTCTCAAAACCAAACAAATA
TTGGGTTGAAAGCTCGCAGAAAAGGTATGTGCCATGTGCAGAAGATTGCGTACTTGGAATCGTGGTTGACTCTAGATCCGATAATTTTCTTGTTGACATAAAAGGTCCTT
CATTGGCCTCTCTTCCTGTTCTTGCATTTGAAGGAGGAACAAGACGAAACATTCCCAAGTTCGAGATGGGTGCCCTTCTTTATGTGCGGGTGGTGAAGGTAAACCCTGGT
ATGAATCCCGAGCTGGCATGCACTGATGCTAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAGGATGGTTACATCTTTGACTGTTCAACTGGCTTATCAAGAATGCTTCT
AAGCTCGCCAACATGTCCTGTTCTTGAATCTCTTGGGAAGAAGCTTTCATTCGAGACGGCAGTTGGTATAAATGGCCGAGTTTGGGTCAATGCAGATTCCCCGTCCACAA
CCATTGTTGTTTCTAATGCAATAATGAACTCAGAAACTCTGAGTGGGGTCCAACAGAGAATCATGGTGGACAAGCTCCTAAATAATTTAAAGCTATCAAGTTAAGTCTTG
TATCATTTAGCTAATGGGTTTTAGGAAACAGTTGTTAATCAATTCTTTTCTCCTCTCCAACCAG
Protein sequenceShow/hide protein sequence
MVEKSSSSSSILVDQPVVPGDVVLDLSNMTNETIKLGGGLRQDHDAISVAKVGKLRFSKPNKYWVESSQKRYVPCAEDCVLGIVVDSRSDNFLVDIKGPSLASLPVLAFE
GGTRRNIPKFEMGALLYVRVVKVNPGMNPELACTDASGKAAGFGLLKDGYIFDCSTGLSRMLLSSPTCPVLESLGKKLSFETAVGINGRVWVNADSPSTTIVVSNAIMNS
ETLSGVQQRIMVDKLLNNLKLSS