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Carg18179 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18179
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription factor ILI6-like
Genome locationCarg_Chr11:817594..817942
RNA-Seq ExpressionCarg18179
SyntenyCarg18179
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008453188.1 PREDICTED: transcription factor PRE3-like [Cucumis melo]1.0e-3393.48Show/hide
Query:  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIR+LHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

XP_022135424.1 transcription factor ILI6-like [Momordica charantia]1.1e-3595.6Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

XP_022933575.1 transcription factor ILI6-like [Cucurbita moschata]5.2e-38100Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

XP_022973084.1 transcription factor ILI6-like [Cucurbita maxima]1.5e-3798.9Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

XP_038880650.1 transcription factor PRE3-like [Benincasa hispida]2.0e-3493.41Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDK SAA VLQETCNYIR+LHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

TrEMBL top hitse value%identityAlignment
A0A1S3BWE2 transcription factor PRE3-like4.9e-3493.48Show/hide
Query:  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIR+LHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

A0A6J1C1E4 transcription factor ILI6-like5.2e-3695.6Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA+VLQETCNYIRSLHREVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

A0A6J1F586 transcription factor ILI6-like2.5e-38100Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

A0A6J1IDH8 transcription factor ILI6-like7.3e-3898.9Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

A0A7N2MQ69 BHLH domain-containing protein1.1e-3390.11Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+RRSRSRQSG SRITDDQINDLVSKLQQLLPEIR R+SDK+SAA+VLQETCNYIR+LHREVDDLSERL+ELLAT+DTAQAAIIRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

SwissProt top hitse value%identityAlignment
B8APB5 Transcription factor ILI62.0e-2979.35Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM
        MS+RRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+  ++ VLQETCNYIRSLH+EVDDLSERL+ELLATSD  +AQAAIIRSLLM
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM

Q0DUR2 Transcription factor ILI62.0e-2979.35Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM
        MS+RRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+  ++ VLQETCNYIRSLH+EVDDLSERL+ELLATSD  +AQAAIIRSLLM
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM

Q338G6 Transcription factor ILI71.1e-2573.33Show/hide
Query:  TRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM
        +RRSRSR S ++RITD+QI DLVSKLQ LLPE R R +D+  +A VLQETC+YIRSLHREVDDLSERLAELLA +D  TAQAA+IR LLM
Subjt:  TRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLLM

Q8GW32 Transcription factor PRE63.0e-2877.17Show/hide
Query:  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLL
        MS+RR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDK SA+ VLQETCNYIR+LHREVDDLS+RL+ELLA++D  +A+AAIIRSLL
Subjt:  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLL

Q9CA64 Transcription factor PRE32.7e-2979.57Show/hide
Query:  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDK SAA VLQ+TCNYIR+LHREVDDLSERL+ELLA SDTAQAA+IRSLL Q
Subjt:  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.1e-2977.17Show/hide
Query:  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLL
        MS+RR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDK SA+ VLQETCNYIR+LHREVDDLS+RL+ELLA++D  +A+AAIIRSLL
Subjt:  MSTRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSD--TAQAAIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 11.9e-3079.57Show/hide
Query:  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDK SAA VLQ+TCNYIR+LHREVDDLSERL+ELLA SDTAQAA+IRSLL Q
Subjt:  MSTRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein5.5e-2265.59Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELL--ATSDTAQAAIIRSLLM
        MS RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI   R+SDK SA+ VLQETCNYIR LHREVD+LS+RL++LL     D+ +AA+IRSLLM
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELL--ATSDTAQAAIIRSLLM

AT3G47710.1 BANQUO 38.3e-2667.39Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ
        MS+R+SRSRQ+G+S ITD+QINDLV +L +LLPE+  +R+S K SA+ VLQETC+YIR+L +EVDDLSERL++LL ++D+AQAA+IRSLLMQ
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein2.1e-2163.44Show/hide
Query:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLAT--SDTAQAAIIRSLLM
        MS RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI + R+SDK+SA+ VLQETCNYIR+L+REVD+LSERL++LL +   D+ +AA+IRSLLM
Subjt:  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLAT--SDTAQAAIIRSLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCACCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCGAGAATCACCGACGACCAAATTAACGACCTCGTTTCCAAGTTGCAGCAGCTTCTTCCCGAGATTCGCCA
CAGACAATCCGATAAGAGTTCAGCAGCACACGTGTTGCAAGAGACGTGTAATTACATAAGAAGCCTACATCGGGAGGTGGACGATCTAAGCGAGAGACTAGCGGAATTGT
TGGCGACGTCGGATACGGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCACCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCGAGAATCACCGACGACCAAATTAACGACCTCGTTTCCAAGTTGCAGCAGCTTCTTCCCGAGATTCGCCA
CAGACAATCCGATAAGAGTTCAGCAGCACACGTGTTGCAAGAGACGTGTAATTACATAAGAAGCCTACATCGGGAGGTGGACGATCTAAGCGAGAGACTAGCGGAATTGT
TGGCGACGTCGGATACGGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG
Protein sequenceShow/hide protein sequence
MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLHREVDDLSERLAELLATSDTAQAAIIRSLLMQ