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Carg18213 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18213
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L34, chloroplastic-like
Genome locationCarg_Chr07:953576..954908
RNA-Seq ExpressionCarg18213
SyntenyCarg18213
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000271 - Ribosomal protein L34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134668.1 50S ribosomal protein L34, chloroplastic [Cucumis sativus]1.8e-5687.1Show/hide
Query:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPSSSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAA
Subjt:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_008439748.1 PREDICTED: 50S ribosomal protein L34, chloroplastic [Cucumis melo]2.8e-5788.39Show/hide
Query:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPSSSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAA
Subjt:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_022926470.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita moschata]2.1e-68100Show/hide
Query:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
        MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
Subjt:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK

Query:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_023003306.1 50S ribosomal protein L34, chloroplastic-like [Cucurbita maxima]1.8e-6798.67Show/hide
Query:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
        MAAISVISSLCVSTVRVPSASLVFSTGSR+SSISLNTANNASARPGLLHCSFLPSSSLSC SSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
Subjt:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK

Query:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

XP_038883793.1 50S ribosomal protein L34, chloroplastic [Benincasa hispida]9.1e-5687.74Show/hide
Query:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+SS  VST    VRVPSASLV STG R   S+SLNTANN SAR GLLHCSFL SSSLSC SSFSGLSLGLDWS KIGVGQGK RSLVVRAGKAA
Subjt:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

TrEMBL top hitse value%identityAlignment
A0A0A0KI92 Uncharacterized protein8.8e-5787.1Show/hide
Query:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+S+  VST    VRVPSASLVFSTGSR   S+SLNT NN SAR GLLHCSFLPSSSLSC SSFSGLSLGLDWS K+GVGQGK R LVVRAGKAA
Subjt:  MAAISVISSLCVST----VRVPSASLVFSTGSRS-SSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A1S3AZG6 50S ribosomal protein L34, chloroplastic1.4e-5788.39Show/hide
Query:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPSSSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAA
Subjt:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A5D3CSJ7 50S ribosomal protein L341.4e-5788.39Show/hide
Query:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA
        MAAISV+SS  VS     VRVPSASLV STGSR S S+SLNTANN SAR GLLHCSFLPSSSLSC SSFSGLSLGLDWS K+GVGQGK RSLVVRAGKAA
Subjt:  MAAISVISSLCVS----TVRVPSASLVFSTGSRSS-SISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAA

Query:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  LCQTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1EL73 50S ribosomal protein L34, chloroplastic-like1.0e-68100Show/hide
Query:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
        MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
Subjt:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK

Query:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

A0A6J1KNU0 50S ribosomal protein L34, chloroplastic-like8.5e-6898.67Show/hide
Query:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
        MAAISVISSLCVSTVRVPSASLVFSTGSR+SSISLNTANNASARPGLLHCSFLPSSSLSC SSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK
Subjt:  MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTK

Query:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
Subjt:  RNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

SwissProt top hitse value%identityAlignment
P82244 50S ribosomal protein L34, chloroplastic3.7e-3666.01Show/hide
Query:  MAAISVISS--LCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFL-PSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALC
        MA +S++S+      T R PSASL F TGSR+++  + + N  SAR G LHCSFL PSSSLS  S+FSGLSLGLD +   GV   + R  VVRAGKAALC
Subjt:  MAAISVISS--LCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFL-PSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALC

Query:  QTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
         TKR+RSRKSLARTHGFR RM TT+GRA+LKRRRAKGRK+LCTK+NPSSGKRA
Subjt:  QTKRNRSRKSLARTHGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Q9LP37 50S ribosomal protein L34, chloroplastic6.6e-3368.89Show/hide
Query:  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKI-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
        VPSASL   TG R SS SL     +SA   LLHCSFL SS +S  S FSGLS+  D S +  G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFR
Subjt:  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKI-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR

Query:  RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA

Arabidopsis top hitse value%identityAlignment
AT1G29070.1 Ribosomal protein L344.7e-3468.89Show/hide
Query:  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKI-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR
        VPSASL   TG R SS SL     +SA   LLHCSFL SS +S  S FSGLS+  D S +  G+   +RR LVVRAGKAALCQTKR+RSRKSLARTHGFR
Subjt:  VPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKI-GVGQGKRRSLVVRAGKAALCQTKRNRSRKSLARTHGFR

Query:  RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA
        RRMRTT+GRA +KRRRAKGR  LC KSNPSSGKRA
Subjt:  RRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCGATATCGGTAATTTCGTCCCTATGTGTTTCGACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATAC
CGCAAACAACGCTTCTGCCCGTCCTGGACTGCTTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCTTTCTCAGGCTTGTCGTTGGGTTTGGATTGGA
GTCCTAAAATTGGGGTTGGACAAGGAAAGCGTCGGAGCTTAGTGGTTAGGGCGGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGG
ACTCATGGCTTTCGCCGACGAATGCGAACCACCAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGG
AAAGCGTGCTTAA
mRNA sequenceShow/hide mRNA sequence
AACAACCATATCAGGATAAGGCTCTTTCTTCCTCCCAACCAAAATTAGCTGAAAGGGGGAAACACAGTCAGTCCAACAATGGCAGCGATATCGGTAATTTCGTCCCTATG
TGTTTCGACTGTCCGCGTTCCTTCAGCTTCACTTGTATTCTCCACTGGTTCTAGAAGTTCCTCCATATCTCTAAATACCGCAAACAACGCTTCTGCCCGTCCTGGACTGC
TTCATTGTTCGTTTCTTCCTTCTTCCTCCCTTTCGTGTAAATCATCTTTCTCAGGCTTGTCGTTGGGTTTGGATTGGAGTCCTAAAATTGGGGTTGGACAAGGAAAGCGT
CGGAGCTTAGTGGTTAGGGCGGGAAAGGCTGCACTATGTCAGACCAAAAGAAACAGGTCGCGTAAATCCTTAGCTCGGACTCATGGCTTTCGCCGACGAATGCGAACCAC
CAATGGTAGAGCTGTTCTAAAGCGCAGACGTGCCAAGGGTAGAAAGGTTCTCTGCACAAAGTCCAACCCTAGCAGCGGAAAGCGTGCTTAAGCTTTTCTCGCTTTAACTA
TTTCTAAGGTAAATTAGGCAATGTTGTCTAATTCACTCTTCGAATGACTGCTCAAGATAGCTCATTATGTTATATGATGCTTTGTTATTGATTCATTTGAATGTTCCTTA
ACTCAAATTATCAATGTTAAATTCAAATTACTGGATTCGATTAGCTTATGTGATTCATACTTTCCCATTGTTCATTTGAAAATCTCCTCTGAACTGGAATATGTACTCTG
AGGCTTCAGGTTTGTTGTTTCTCATCTAATGTTAGGCCTTCTCGTCATTAATGTTTAGGTCTGAAATCTAAATCACTTCAGGTTTGTTGTTTCTTATCTAATGTTAGGCC
TTCTCGTCATTAATGTTTAGGTCTGAAATCTAAATCATATCAGTTT
Protein sequenceShow/hide protein sequence
MAAISVISSLCVSTVRVPSASLVFSTGSRSSSISLNTANNASARPGLLHCSFLPSSSLSCKSSFSGLSLGLDWSPKIGVGQGKRRSLVVRAGKAALCQTKRNRSRKSLAR
THGFRRRMRTTNGRAVLKRRRAKGRKVLCTKSNPSSGKRA