; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18239 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18239
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontransmembrane protein 50A-like
Genome locationCarg_Chr04:18176819..18182759
RNA-Seq ExpressionCarg18239
SyntenyCarg18239
Gene Ontology termsGO:0032511 - late endosome to vacuole transport via multivesicular body sorting pathway (biological process)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR007919 - Uncharacterised protein family UPF0220


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032755.1 Transmembrane protein 50A [Cucurbita argyrosperma subsp. argyrosperma]6.9e-71100Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

XP_008460472.1 PREDICTED: transmembrane protein 50A [Cucumis melo]1.1e-6896.3Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

XP_022963347.1 transmembrane protein 50A-like [Cucurbita moschata]9.0e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTGLSAWTG+AGVLQCVFVLVSGLIYWTSHTE
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

XP_022993057.1 transmembrane protein 50A [Cucurbita maxima]2.4e-6895.56Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

XP_038874577.1 transmembrane protein 50A [Benincasa hispida]8.4e-6996.3Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

TrEMBL top hitse value%identityAlignment
A0A1S3CCJ8 transmembrane protein 50A5.3e-6996.3Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

A0A6J1CJN8 transmembrane protein 50A2.6e-6894.81Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSV VSF+HYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        S+VKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

A0A6J1HF20 transmembrane protein 50A-like4.3e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTGLSAWTG+AGVLQCVFVLVSGLIYWTSHTE
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

A0A6J1JKY2 transmembrane protein 50A-like4.3e-7199.26Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTGLSAWTG+AGVLQCVFVLVSGLIYWTSHTE
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

A0A6J1JRP9 transmembrane protein 50A1.2e-6895.56Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSF+HYLPGIFASFAALMFNCVR+EDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGVLQCVFVLVSGLIYWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

SwissProt top hitse value%identityAlignment
O95807 Transmembrane protein 50A2.7e-0932.54Show/hide
Query:  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSA
        AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ +L    V K     
Subjt:  AGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSA

Query:  WTGIAGVLQCVFVLVSGLIYWTSHTE
        + GIA   Q  F+   GL++    TE
Subjt:  WTGIAGVLQCVFVLVSGLIYWTSHTE

Q3SZL9 Transmembrane protein 50B5.6e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        +L   + V      + G+A   Q   +  S LIY    TE
Subjt:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

Q54T60 Transmembrane protein 50 homolog1.7e-0826.52Show/hide
Query:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFLHYLPGIFASFAALMFNCVRKEDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ
        P +AG +F AGW+ W+D  V  +            + +++YLPGIFA+   +M N V    ++ +   ++ G  ++++WLF ++ +SF  + A++ +++ 
Subjt:  PGVAGAVFGAGWWFWVDAVVCSSV----------AVSFLHYLPGIFASFAALMFNCVRKEDIDYSP--YEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQ

Query:  DSVV---KTGLSAWTGIAGVLQCVFVLVSGLI
          +        + W GIA  LQ   + +S L+
Subjt:  DSVV---KTGLSAWTGIAGVLQCVFVLVSGLI

Q9CXL1 Transmembrane protein 50A1.6e-0931.43Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        MD  E  +      AG +F  GWW  +DA V       F H  +  G+ A+ A LM N V    +    Y E   G+   ++WLF  ++++F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        +L    V K     + GIA   Q  F+   GL++    TE
Subjt:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

Q9D1X9 Transmembrane protein 50B2.5e-0729.29Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG
        +D +E  +     VAG +F  GWW  +DA V         H  +  G+F++ A  M N V    +    YE    G    ++WLF  +++ F SL AS+ 
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLH--YLPGIFASFAALMFNCVRKEDIDYSPYEE---GEWRLKLWLFFAYVVSFVSLAASVG

Query:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        +L   + V   +  + G+A   Q   +  S LIY    TE
Subjt:  LLIQDSVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE

Arabidopsis top hitse value%identityAlignment
AT1G36980.1 unknown protein3.2e-6685.19Show/hide
Query:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD
        MDLAELW+IFGPG +GAVFG GWWFWVDAVVCSS+ V F+HYLPGIFAS  ALMFNCVRKEDIDYSPY+EGEWRLKLWLF AYVV+FVSLAASVGLLIQD
Subjt:  MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQD

Query:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE
        SVVKTG S WTG+AGV QCVFVL+SGL+YWTSH+E
Subjt:  SVVKTGLSAWTGIAGVLQCVFVLVSGLIYWTSHTE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGTCTGCAGTTCTGTTGCCGT
CTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCATATGAGGAAGGCGAATGGA
GATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAAACTGGCCTATCAGCATGG
ACGGGAATTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACACGGAATAA
mRNA sequenceShow/hide mRNA sequence
AAAAGGAAGAATCCACCAATGGATTTGGCGGAGCTTTGGTCAATTTTCGGCCCTGGCGTTGCCGGAGCTGTGTTCGGCGCCGGGTGGTGGTTCTGGGTTGACGCCGTTGT
CTGCAGTTCTGTTGCCGTCTCCTTCCTCCACTATCTTCCAGGTATTTTTGCTTCGTTTGCGGCTCTGATGTTCAATTGCGTTCGGAAGGAAGACATCGATTATTCACCAT
ATGAGGAAGGCGAATGGAGATTAAAGCTTTGGCTCTTCTTCGCTTATGTGGTATCCTTCGTTTCATTAGCAGCATCTGTGGGGCTCTTGATTCAAGATTCAGTAGTAAAA
ACTGGCCTATCAGCATGGACGGGAATTGCAGGAGTATTGCAGTGTGTGTTTGTGTTGGTTAGTGGGTTGATTTACTGGACTTCTCACACGGAATAAGTCGGAAAGAATTA
TGCACTTAGACCTCAGAGGCTGAAGAGTTACCAACTGCATAGCGCGTTGCATCGTCAAGTCGATTGTGTGTCACTTGACTTTTCCAACTATGGAACTGAACAGTAAGAGC
TTTCTACTTCTTGTAAATGTCATGTTAATCTTAAGCTGAAACCATGTCTGTAAATCTTTATGAATCCAATATAAGTGAGCAAGTGAGCCAGCATTCAATGTTTCAGCCAT
TTCAGTTTGTCGCAGTGTTCATATTGTATACTTACAAAGCATAAAAATGATGCAGGGTGGTCAGTTTTGTTTTGGTTTTTAGTTTCTTTCCTTCGAAAAATTGTGGATGC
AAAATGAATTAGATATATTTTAATCTGCCGAAATTCATTAATTGAAAGGTTATCTTATTACACCGTTTTATTTTATTTTTTTATTAACA
Protein sequenceShow/hide protein sequence
MDLAELWSIFGPGVAGAVFGAGWWFWVDAVVCSSVAVSFLHYLPGIFASFAALMFNCVRKEDIDYSPYEEGEWRLKLWLFFAYVVSFVSLAASVGLLIQDSVVKTGLSAW
TGIAGVLQCVFVLVSGLIYWTSHTE