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Carg18246 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18246
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnon-specific lipid-transfer protein-like protein At5g64080
Genome locationCarg_Chr04:18123377..18123769
RNA-Seq ExpressionCarg18246
SyntenyCarg18246
Gene Ontology termsGO:0006869 - lipid transport (biological process)
GO:0005886 - plasma membrane (cellular component)
GO:0031225 - anchored component of membrane (cellular component)
GO:0008289 - lipid binding (molecular function)
InterPro domainsIPR000528 - Plant non-specific lipid-transfer protein/Par allergen
IPR016140 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain
IPR036312 - Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain superfamily
IPR043325 - Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6602055.1 Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. sororia]2.5e-6298.46Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAMAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCAFDFILV
        NVTRAIDLPATCGIST LSDCGCAFDFILV
Subjt:  NVTRAIDLPATCGISTRLSDCGCAFDFILV

KAG7032748.1 Non-specific lipid-transfer protein-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]5.4e-65100Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCAFDFILV
        NVTRAIDLPATCGISTRLSDCGCAFDFILV
Subjt:  NVTRAIDLPATCGISTRLSDCGCAFDFILV

XP_022939816.1 non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata]4.7e-2456.45Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAM++I SLALF  CIAA+       +A A SP  SP PSA DC AVVY ++PCV Y TIGST +  S  CCK V+ V+K  A CMC  LKQ+  +GIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCA
        N TRA+ LPATCG  T L+DC  A
Subjt:  NVTRAIDLPATCGISTRLSDCGCA

XP_022959525.1 non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita moschata]6.9e-6096.15Show/hide
Query:  MAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV
        MAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNY+TIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV
Subjt:  MAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV

Query:  TRAIDLPATCGIS--TRLSDCGCAFDFILV
        TRAIDLPATCGIS  T LSDCGCAFDFILV
Subjt:  TRAIDLPATCGIS--TRLSDCGCAFDFILV

XP_023553719.1 non-specific lipid-transfer protein-like protein At5g64080 [Cucurbita pepo subsp. pepo]3.6e-6196.15Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAMAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNYITIGSTM MPS+VCCKNVESV+KWNAKCMCVGLKQSESLGIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCAFDFILV
        NVTRAIDLPATCGIST LSDCGCAFDFILV
Subjt:  NVTRAIDLPATCGISTRLSDCGCAFDFILV

TrEMBL top hitse value%identityAlignment
A0A1S3CC53 SH3 domain-containing protein C23A1.17-like5.5e-2350.81Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        M M MI +L+LFLTCI A        IASA  P  SP P A DC  +V+ ILPCV+Y+TIGST A  S+VCC+ +++ ++ +A+CMC  LKQS+ +GI L
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCA
        N+TR + LPA CGI   L +C  A
Subjt:  NVTRAIDLPATCGISTRLSDCGCA

A0A5D3DSV8 SH3 domain-containing protein C23A1.17-like4.2e-2351.61Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        M M MI +L+LFLTCI A        IASA  P  SP P A DC  +V+ ILPCV+Y+TIGST A  S+VCC+ +++ ++ +A+CMC  LKQS+ +GI L
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCA
        N+TR I LPA CGI   L +C  A
Subjt:  NVTRAIDLPATCGISTRLSDCGCA

A0A6J1FGX0 non-specific lipid-transfer protein-like protein At5g640802.3e-2456.45Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAM++I SLALF  CIAA+       +A A SP  SP PSA DC AVVY ++PCV Y TIGST +  S  CCK V+ V+K  A CMC  LKQ+  +GIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCA
        N TRA+ LPATCG  T L+DC  A
Subjt:  NVTRAIDLPATCGISTRLSDCGCA

A0A6J1H6I6 non-specific lipid-transfer protein-like protein At5g640803.3e-6096.15Show/hide
Query:  MAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV
        MAMIQSLALFLTCIAAIWICNENIIASAASPL SPRPSAVDCPAVVYAILPCVNY+TIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV
Subjt:  MAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNV

Query:  TRAIDLPATCGIS--TRLSDCGCAFDFILV
        TRAIDLPATCGIS  T LSDCGCAFDFILV
Subjt:  TRAIDLPATCGIS--TRLSDCGCAFDFILV

A0A6J1K2B1 non-specific lipid-transfer protein-like protein At5g640808.6e-2455.65Show/hide
Query:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL
        MAM++I SLALF  CIAA+       +A A SP  SP PSA+DC AVVY ++PCV Y TIGST A  S  CCK V+ V+K    CMC  LKQ+  +GIQL
Subjt:  MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQL

Query:  NVTRAIDLPATCGISTRLSDCGCA
        N TRA+ LPA CG  T L+DC  A
Subjt:  NVTRAIDLPATCGISTRLSDCGCA

SwissProt top hitse value%identityAlignment
Q2PE60 Non-specific lipid transfer protein GPI-anchored 238.5e-1337.5Show/hide
Query:  SPRPS-AVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI
        +P+PS + DC +V+Y+++ C++++T+GST   P+K CC  V++VL ++ KC+C  L+ S  +G  L+ T+A+ +P  C +
Subjt:  SPRPS-AVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI

Q2PE70 Non-specific lipid transfer protein GPI-anchored 49.1e-1533.33Show/hide
Query:  MAMAMIQSLALFL----TCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESL
        M  +++ S  L L    + +  I   N++  A +     +P PS+ DC  V+Y+++ C+ Y+ +GS    P K CC  +E+VL++N +C+C GL  +  +
Subjt:  MAMAMIQSLALFL----TCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESL

Query:  GIQLNVTRAIDLPATCGISTRLSDCG
        GI+LN TRA+  P  C +S     CG
Subjt:  GIQLNVTRAIDLPATCGISTRLSDCG

Q6ASY2 Non-specific lipid transfer protein-like 12.6e-0941.57Show/hide
Query:  ASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTM-AMPSKVCCKNVESVLKWNAK--CMCVGLKQSESLGIQLNVTRAIDLPATCG
        A+A+SP  +P   AVDC A    +  C++Y+T G T  + PSK+CC  V+  LK +A   C+C     S++L + +N+TRA+ LPA CG
Subjt:  ASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTM-AMPSKVCCKNVESVLKWNAK--CMCVGLKQSESLGIQLNVTRAIDLPATCG

Q8VYI9 Non-specific lipid transfer protein GPI-anchored 312.5e-1231.53Show/hide
Query:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC
        L  I  + + + +++ ++    ++P PS VDC  ++  +  C+++++ G T+A P   CC  +++VLK +++C+C   K S SLG+ LN+T+A  LPA C
Subjt:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC

Query:  GI-STRLSDCG
         + +  ++ CG
Subjt:  GI-STRLSDCG

Q9ZQI8 Non-specific lipid transfer protein GPI-anchored 116.8e-1031.87Show/hide
Query:  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS
        +I S  + +S  R  +AVDC +++  +  C++++T GST+  P   CC  +++V++   +C+C   K S SLG+ L++++A  LP+ C ++
Subjt:  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS

Arabidopsis top hitse value%identityAlignment
AT1G36150.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein6.1e-1437.5Show/hide
Query:  SPRPS-AVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI
        +P+PS + DC +V+Y+++ C++++T+GST   P+K CC  V++VL ++ KC+C  L+ S  +G  L+ T+A+ +P  C +
Subjt:  SPRPS-AVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGI

AT2G13820.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein4.8e-1131.87Show/hide
Query:  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS
        +I S  + +S  R  +AVDC +++  +  C++++T GST+  P   CC  +++V++   +C+C   K S SLG+ L++++A  LP+ C ++
Subjt:  IIASAASPLSSPRP-SAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATCGIS

AT4G08670.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein6.5e-1633.33Show/hide
Query:  MAMAMIQSLALFL----TCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESL
        M  +++ S  L L    + +  I   N++  A +     +P PS+ DC  V+Y+++ C+ Y+ +GS    P K CC  +E+VL++N +C+C GL  +  +
Subjt:  MAMAMIQSLALFL----TCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESL

Query:  GIQLNVTRAIDLPATCGISTRLSDCG
        GI+LN TRA+  P  C +S     CG
Subjt:  GIQLNVTRAIDLPATCGISTRLSDCG

AT5G64080.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.8e-1331.53Show/hide
Query:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC
        L  I  + + + +++ ++    ++P PS VDC  ++  +  C+++++ G T+A P   CC  +++VLK +++C+C   K S SLG+ LN+T+A  LPA C
Subjt:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC

Query:  GI-STRLSDCG
         + +  ++ CG
Subjt:  GI-STRLSDCG

AT5G64080.2 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein1.8e-1331.53Show/hide
Query:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC
        L  I  + + + +++ ++    ++P PS VDC  ++  +  C+++++ G T+A P   CC  +++VLK +++C+C   K S SLG+ LN+T+A  LPA C
Subjt:  LTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPATC

Query:  GI-STRLSDCG
         + +  ++ CG
Subjt:  GI-STRLSDCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAATGGCTATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGTCGCC
TCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGGCGATGCCCTCGAAAGTTTGCTGCAAGA
ATGTGGAAAGTGTGTTGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCG
ACTTGTGGAATTTCGACTCGGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAATGGCTATGATTCAGAGTTTGGCTCTGTTCTTGACCTGCATTGCAGCGATATGGATTTGCAATGAAAATATAATTGCGAGTGCTGCCTCGCCGTTGTCGTCGCC
TCGGCCGAGTGCGGTGGATTGCCCGGCGGTGGTGTATGCGATACTGCCGTGCGTGAATTACATCACGATCGGGAGCACGATGGCGATGCCCTCGAAAGTTTGCTGCAAGA
ATGTGGAAAGTGTGTTGAAATGGAATGCTAAATGTATGTGCGTTGGGTTGAAGCAGAGCGAGAGCTTGGGGATTCAATTGAATGTTACTAGAGCGATTGATCTTCCTGCG
ACTTGTGGAATTTCGACTCGGCTTTCTGATTGCGGCTGTGCGTTTGATTTTATTCTTGTTTGA
Protein sequenceShow/hide protein sequence
MAMAMIQSLALFLTCIAAIWICNENIIASAASPLSSPRPSAVDCPAVVYAILPCVNYITIGSTMAMPSKVCCKNVESVLKWNAKCMCVGLKQSESLGIQLNVTRAIDLPA
TCGISTRLSDCGCAFDFILV