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Carg18269 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18269
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPolcalcin
Genome locationCarg_Chr04:17995583..17995837
RNA-Seq ExpressionCarg18269
SyntenyCarg18269
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016902555.1 PREDICTED: polcalcin Ole e 3 [Cucumis melo]4.3e-3185.71Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD QD+A+R+RIFKRFD NGDGKISS+ELGE+LKTLGSVT DEV RMMAEIDTDGDGFISYEEFT+FA ANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

XP_022141635.1 polcalcin Bet v 4 [Momordica charantia]4.3e-3185.71Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD QDK +RDRIFKRFD NGDGKIS+ ELGE+LKTLGSVT DEV RMMAEIDTDGDGFISYEEFT+FA ANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

XP_022961155.1 polcalcin Che a 3-like [Cucurbita moschata]6.2e-38100Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

XP_022990969.1 polcalcin Che a 3-like [Cucurbita maxima]6.9e-3797.62Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        MSDDAQDK DRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFT+FALANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

XP_023548959.1 polcalcin Che a 3-like [Cucurbita pepo subsp. pepo]1.8e-3798.81Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        MSDDAQDK DRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

TrEMBL top hitse value%identityAlignment
A0A5A7V407 Polcalcin Ole e 32.1e-3185.71Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD QD+A+R+RIFKRFD NGDGKISS+ELGE+LKTLGSVT DEV RMMAEIDTDGDGFISYEEFT+FA ANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

A0A6J1CIN1 polcalcin Bet v 42.1e-3185.71Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD QDK +RDRIFKRFD NGDGKIS+ ELGE+LKTLGSVT DEV RMMAEIDTDGDGFISYEEFT+FA ANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

A0A6J1FEW4 polcalcin Ole e 3-like2.1e-3183.33Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DDA+DK DRDRIFKRFD NGDG+IS++ELGESLKTLGSVT DEV RMMAEIDTDGDG+ISYEEFT+FA ANRGL++DVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

A0A6J1HBA8 polcalcin Che a 3-like3.0e-38100Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

A0A6J1JTH0 polcalcin Che a 3-like3.3e-3797.62Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        MSDDAQDK DRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFT+FALANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 34.5e-3179.76Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD Q+ A+ +RIFKRFD NGDGKISS+ELGE+LKTLGSVT +E+ RMMAEIDTDGDGFIS+EEFT FA ANRGLVKDVAKIF
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

O81701 Polcalcin Aln g 41.9e-2977.65Show/hide
Query:  MSDD-AQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD  QD+A+ +RIFK FD NGDGKIS++ELG++LKTLGSVT DEV  MMAEIDTDGDGFIS++EFTNFA ANRGLVKDVAKIF
Subjt:  MSDD-AQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

Q39419 Polcalcin Bet v 43.8e-3077.65Show/hide
Query:  MSDD-AQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M+DD  QDKA+R+RIFKRFD NGDGKIS+ ELGE+LKTLGS+T DEV  MMAEIDTDGDGFIS++EFT+F  ANRGL+KDVAKIF
Subjt:  MSDD-AQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

Q84V36 Polcalcin Che a 32.0e-3182.93Show/hide
Query:  DDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        D  QD ADR+RIFKRFDTNGDGKISS+ELG++LKTLGSVT DEV RMMAEIDTDGDGFIS++EFT+FA ANRGLVKDV+KIF
Subjt:  DDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

Q8VWY6 Polcalcin Nic t 11.3e-3077.38Show/hide
Query:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        M++D QD ADR+RIFKRFD NGDGKISS ELGE+LK LGSVT++EV  MMAE+DTDGDGFISYEEF  FA ANRGL+KDVAK+F
Subjt:  MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

Arabidopsis top hitse value%identityAlignment
AT1G24620.1 EF hand calcium-binding protein family3.4e-1051.79Show/hide
Query:  DRIFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEF
        + +FK+FD NGDGKISS ELG  + +LG  V  +E+ + + EID  GDG+I++EEF
Subjt:  DRIFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEF

AT1G73630.1 EF hand calcium-binding protein family4.1e-1146.27Show/hide
Query:  RIFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVK
        ++F +FD NGDGKIS +ELG   K++G S T +E++R++ EID D DGFI+ EEF     ++   V+
Subjt:  RIFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVK

AT3G03430.1 Calcium-binding EF-hand family protein1.9e-2972.84Show/hide
Query:  DAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        DA +KA+ DRIFK+FD NGDGKIS+ ELG++LK LGSVT++++ RMMAEIDTDGDG+ISY+EF +FA ANRGL+KDVAKIF
Subjt:  DAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF

AT3G51920.1 calmodulin 95.9e-1046.67Show/hide
Query:  IFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEFTNFALA
        +F+ FD +GDG IS  ELGE +K +G  +T +E   M+ E D DGDGF+S+ EF+   +A
Subjt:  IFKRFDTNGDGKISSTELGESLKTLG-SVTNDEVHRMMAEIDTDGDGFISYEEFTNFALA

AT5G17480.1 pollen calcium-binding protein 11.9e-2977.78Show/hide
Query:  DAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF
        DA +KA+ DRIFK+FD NGDGKIS+ EL E+LKTLGSVT D+V RMMAEIDTDGDG ISY+EFT+FA ANRGL+KDVAKIF
Subjt:  DAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTGATGATGCTCAAGACAAAGCTGACCGTGACCGTATATTCAAGCGTTTTGATACCAATGGTGACGGTAAGATCTCTTCAACCGAGCTCGGGGAATCATTGAAAAC
ACTTGGCTCTGTTACCAACGACGAAGTTCATAGGATGATGGCCGAGATCGATACTGATGGCGACGGGTTCATTTCGTATGAAGAATTCACAAATTTCGCCCTTGCCAACC
GTGGATTAGTGAAGGATGTTGCAAAGATTTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTGATGATGCTCAAGACAAAGCTGACCGTGACCGTATATTCAAGCGTTTTGATACCAATGGTGACGGTAAGATCTCTTCAACCGAGCTCGGGGAATCATTGAAAAC
ACTTGGCTCTGTTACCAACGACGAAGTTCATAGGATGATGGCCGAGATCGATACTGATGGCGACGGGTTCATTTCGTATGAAGAATTCACAAATTTCGCCCTTGCCAACC
GTGGATTAGTGAAGGATGTTGCAAAGATTTTCTAG
Protein sequenceShow/hide protein sequence
MSDDAQDKADRDRIFKRFDTNGDGKISSTELGESLKTLGSVTNDEVHRMMAEIDTDGDGFISYEEFTNFALANRGLVKDVAKIF