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Carg18306 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18306
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionnucleolin-like
Genome locationCarg_Chr04:17721472..17722050
RNA-Seq ExpressionCarg18306
SyntenyCarg18306
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601992.1 B3 domain-containing transcription factor FUS3, partial [Cucurbita argyrosperma subsp. sororia]5.3e-93100Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

KAG7032689.1 hypothetical protein SDJN02_06739, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-93100Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_022921946.1 nucleolin-like [Cucurbita moschata]6.1e-8996.91Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_022990828.1 nucleolin-like [Cucurbita maxima]7.5e-8795.31Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEEPVFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFI+EEE   DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGN+NDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

XP_023551987.1 nuclear polyadenylated RNA-binding protein 3-like [Cucurbita pepo subsp. pepo]4.2e-9097.4Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEEPVFD KRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

TrEMBL top hitse value%identityAlignment
A0A0A0KMR8 Uncharacterized protein1.3e-4765.55Show/hide
Query:  MAETTNTEEPV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG---------DSLVEG-GKDG--GVCVDVGEAEDEDYQEVD
        MAE TN EE V FDAKRK  D+C + K+ERSNKIQKLEVVEG +SCN V N    G   G          +++EG G DG  G  +D G+ E+EDY    
Subjt:  MAETTNTEEPV-FDAKRK-VDTCSEEKQERSNKIQKLEVVEG-DSCNAVKNGVSGGGIDG---------DSLVEG-GKDG--GVCVDVGEAEDEDYQEVD

Query:  SDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDD--DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND
            E+EDDS+D  K S K+ EDRKGKGIMKDDKGKGK IEE++DDD+D  DDGS+L SEESDLSDDPL EVDLDNILPSRTRRRTVHPGVYFATDLGND
Subjt:  SDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDD--DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND

Query:  NDDSSDSDA
        +DDSSDSDA
Subjt:  NDDSSDSDA

A0A6J1CKB5 prothymosin alpha-B1.3e-4966.18Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------GIDGDSLVEGGKDG--GVCVDVGEAEDEDYQEVD-SDEDEE
        MAETT+ EE  FDAKRK D C E K+E SNKIQKLEVV+ +SC+ VK   +G        ID DSL   GKDG  G  VD GEA+DE+  E D  DE++E
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGG------GIDGDSLVEGGKDG--GVCVDVGEAEDEDYQEVD-SDEDEE

Query:  EDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDD---GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSS
         D+ +D    + +  EDRKGKGI+KDDKGKGK IEE++DDDD+D    GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFA DLGND+DDSS
Subjt:  EDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDD---GSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSS

Query:  DSDA
        DSDA
Subjt:  DSDA

A0A6J1E206 nucleolin-like3.0e-8996.91Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEE VFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEED SDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFIEEEE  DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEE--DDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

A0A6J1JJY9 nucleolin-like3.6e-8795.31Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK
        MAETTNTEEPVFDAKRKVD CSEEKQERSNKIQKLEVVEGDSCNAVKNGVSG GIDGDSLVEGGKDGGVCVDVGEAEDEDY+EVDSDEDEEEDDSDDGGK
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGK

Query:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA
        LSGK+DEDRKGKGIMKDDKGKGKFI+EEE   DDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGN+NDDSSDSDA
Subjt:  LSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA

A0A6J1K0H1 nucleolin-like8.1e-4764.59Show/hide
Query:  MAETTNT-EEPVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDGDSLVEG------GKDGGVC---VDVGEAEDEDYQEVDSDE
        MAET ++ EE  FDAKRK  D C E K+ERSNKIQKLEVVEG+ CN V KNG +G    GD  ++       GKD GV    VD G  E EDY       
Subjt:  MAETTNT-EEPVFDAKRK-VDTCSEEKQERSNKIQKLEVVEGDSCNAV-KNGVSGGGIDGDSLVEG------GKDGGVC---VDVGEAEDEDYQEVDSDE

Query:  DEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDD-----DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND
          +EDD ++G K SGK  +DRKGKGIMKDDKGKGK IEE++DDDDD     DDGSE  +EESDLSDDPL EVDLDNILPSRTRRRTVHPGVYFATDLGN+
Subjt:  DEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDD-----DDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGND

Query:  NDDSSDSDA
        +DDSSDSDA
Subjt:  NDDSSDSDA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G12830.1 unknown protein3.4e-2139.37Show/hide
Query:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG-------------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYQ
        MA+  N ++  F  KRK D   +++   +NK QKL      + +  K+G + G              I  +S V   K     + GV  DVG  E+++ +
Subjt:  MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGG-------------IDGDSLVEGGK-----DGGVCVDVGEAEDEDYQ

Query:  EVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSE------ESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYF
        E + ++DEEE++ ++          DRKGKGI ++DKGKGK IE EE DD+DD   +   E      ESD SDDPL EVDLDNILPSRTRRR+  PGV+ 
Subjt:  EVDSDEDEEEDDSDDGGKLSGKMDEDRKGKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSE------ESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYF

Query:  ATDLGN-----DNDDSSDSDA
          +  N     ++D+SSDSDA
Subjt:  ATDLGN-----DNDDSSDSDA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAAACTACTAACACAGAGGAGCCTGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGT
GGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGG
GAGAAGCAGAAGATGAGGATTATCAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGCGACGATGGTGGAAAGTTGAGTGGGAAAATGGATGAGGATCGTAAG
GGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTT
GTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACA
ACGATGATAGCAGCGATAGCGATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAAACTACTAACACAGAGGAGCCTGTATTTGATGCGAAGCGCAAAGTTGATACCTGCTCTGAAGAGAAACAGGAGCGTTCGAACAAAATTCAGAAGCTCGAAGT
GGTTGAGGGCGATTCCTGCAATGCTGTGAAGAATGGTGTGAGTGGTGGAGGGATTGATGGCGATTCTTTGGTTGAGGGAGGGAAAGATGGTGGAGTTTGTGTGGATGTGG
GAGAAGCAGAAGATGAGGATTATCAGGAGGTGGACAGCGACGAGGATGAGGAGGAAGATGACAGCGACGATGGTGGAAAGTTGAGTGGGAAAATGGATGAGGATCGTAAG
GGGAAGGGTATCATGAAGGACGACAAAGGAAAAGGGAAATTTATTGAGGAGGAGGAAGACGACGACGACGACGATGATGGAAGTGAGTTAGGCTCTGAAGAGAGCGATTT
GTCGGATGATCCGCTTACGGAGGTCGATTTGGACAACATACTTCCTTCAAGAACGCGAAGGCGGACTGTTCATCCTGGAGTTTATTTTGCTACGGATCTGGGGAACGACA
ACGATGATAGCAGCGATAGCGATGCTTGA
Protein sequenceShow/hide protein sequence
MAETTNTEEPVFDAKRKVDTCSEEKQERSNKIQKLEVVEGDSCNAVKNGVSGGGIDGDSLVEGGKDGGVCVDVGEAEDEDYQEVDSDEDEEEDDSDDGGKLSGKMDEDRK
GKGIMKDDKGKGKFIEEEEDDDDDDDGSELGSEESDLSDDPLTEVDLDNILPSRTRRRTVHPGVYFATDLGNDNDDSSDSDA