; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18350 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18350
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L35a-1
Genome locationCarg_Chr04:903988..907122
RNA-Seq ExpressionCarg18350
SyntenyCarg18350
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0015031 - protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0042273 - ribosomal large subunit biogenesis (biological process)
GO:0005789 - endoplasmic reticulum membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001780 - Ribosomal protein L35A
IPR009000 - Translation protein, beta-barrel domain superfamily
IPR018266 - Ribosomal protein L35Ae, conserved site
IPR038661 - Ribosomal protein L35A superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008463199.1 PREDICTED: 60S ribosomal protein L35a-1 [Cucumis melo]1.5e-5597.32Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

XP_022139205.1 60S ribosomal protein L35a-1-like [Momordica charantia]4.4e-5594.64Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGR+GERVRLY+RGT+LGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNG+HYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

XP_022156899.1 60S ribosomal protein L35a-1 [Momordica charantia]3.4e-5595.54Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGR+GERVRLY+RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNG+HYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

XP_022942183.1 60S ribosomal protein L35a-1 [Cucurbita moschata]1.6e-57100Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

XP_022996736.1 60S ribosomal protein L35a-1 [Cucurbita maxima]1.4e-5699.11Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

TrEMBL top hitse value%identityAlignment
A0A0A0KM11 Uncharacterized protein7.3e-5697.32Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

A0A1S3CIN8 60S ribosomal protein L35a-17.3e-5697.32Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

A0A5A7T1I6 Ribosomal protein L35A7.3e-5697.32Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLY RGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVAR HGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

A0A6J1FU58 60S ribosomal protein L35a-17.8e-58100Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

A0A6J1K7M6 60S ribosomal protein L35a-16.6e-5799.11Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWY GKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
        DRVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

SwissProt top hitse value%identityAlignment
P41056 60S ribosomal protein L33-B1.8e-2755.24Show/hide
Query:  ERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGDRVRVFM
        E  RLYV+G  L Y+RSK    PN SL++IEGV +  E  +Y GKR+AY+Y+A  +  GS  R +WGKV R HGNSG+VRA F++NLP K+ G  VR+F+
Subjt:  ERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGDRVRVFM

Query:  YPSNI
        YPSNI
Subjt:  YPSNI

P51422 60S ribosomal protein L35a-49.5e-5386.49Show/hide
Query:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKRLAYIYKAK KKNGSHYRCIWGKV R HGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD

Query:  RVRVFMYPSNI
        RVRVFMYPSNI
Subjt:  RVRVFMYPSNI

Q9C912 60S ribosomal protein L35a-33.9e-5488.39Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKR+AYIYKAK KKNGSHYRCIWGKV R HGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
         RVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

Q9FZH0 60S ribosomal protein L35a-27.3e-5386.49Show/hide
Query:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKRLAYIYKAK KKNGSHYRCIWGKV R HGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD

Query:  RVRVFMYPSNI
        RVRVFMYPSNI
Subjt:  RVRVFMYPSNI

Q9LMK0 60S ribosomal protein L35a-13.9e-5488.39Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY GKR+AYIYKAK KKNGSHYRCIWGKV R HGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
         RVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

Arabidopsis top hitse value%identityAlignment
AT1G07070.1 Ribosomal protein L35Ae family protein2.7e-5588.39Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+Q+EGVN+ +EVSWY GKR+AYIYKAK KKNGSHYRCIWGKV R HGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
         RVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

AT1G41880.1 Ribosomal protein L35Ae family protein5.2e-5486.49Show/hide
Query:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKRLAYIYKAK KKNGSHYRCIWGKV R HGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD

Query:  RVRVFMYPSNI
        RVRVFMYPSNI
Subjt:  RVRVFMYPSNI

AT1G74270.1 Ribosomal protein L35Ae family protein2.7e-5588.39Show/hide
Query:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG
        MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKR+AYIYKAK KKNGSHYRCIWGKV R HGNSG+VRAKF SNLPPKSMG
Subjt:  MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMG

Query:  DRVRVFMYPSNI
         RVRVFMYPSNI
Subjt:  DRVRVFMYPSNI

AT3G55750.1 Ribosomal protein L35Ae family protein6.8e-5486.49Show/hide
Query:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD
        +KGRQGERVRLYVRGT+LGYKRSKSNQYPNTSL+QIEGVN+++EV+WY GKRLAYIYKAK KKNGSHYRCIWGKV R HGNSG+VR+KF SNLPPKSMG 
Subjt:  VKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGD

Query:  RVRVFMYPSNI
        RVRVFMYPSNI
Subjt:  RVRVFMYPSNI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAAGGAAGACAAGGAGAGAGGGTCAGACTCTACGTCAGGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGAT
CGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGGTACCATGGAAAGCGCTTGGCATACATCTACAAGGCTAAAGTGAAGAAGAACGGATCCCACTATCGTTGCATCTGGG
GCAAGGTTGCTAGGGCTCATGGGAACAGTGGCATCGTTAGAGCAAAGTTCAAGTCTAACCTACCACCGAAGTCCATGGGTGACAGAGTCAGAGTGTTCATGTATCCCAGC
AACATTTAA
mRNA sequenceShow/hide mRNA sequence
ATACGCAAGTTCGTCACCTCCTCGCCCGTCCAAGCTCTGTAGCTCAAGGAGAAACTAGACGCCGAAGATGGTGAAAGGAAGACAAGGAGAGAGGGTCAGACTCTACGTCA
GGGGAACAATTCTCGGCTACAAGAGGTCGAAGTCGAACCAGTACCCAAACACTTCTTTACTCCAGATCGAGGGTGTTAATTCCAAGGATGAGGTTTCCTGGTACCATGGA
AAGCGCTTGGCATACATCTACAAGGCTAAAGTGAAGAAGAACGGATCCCACTATCGTTGCATCTGGGGCAAGGTTGCTAGGGCTCATGGGAACAGTGGCATCGTTAGAGC
AAAGTTCAAGTCTAACCTACCACCGAAGTCCATGGGTGACAGAGTCAGAGTGTTCATGTATCCCAGCAACATTTAAGCAATGCCTTGCCTGGATGAAACGAGTGGGTGGG
TGTTACATGAAGGGATTTATATTTTTGTTACATTTTGTGAGCTAAGATAGAACCATTTTCTGTTTCTGAACTGAGTCATTTTTGCTATTTAGGCAATGTTTCACCGTCAT
GTAGTTGAACAGAGTTTTAAAACCATTCGTTATTAGCATTTTCATGTGTCAAGTGATTAAGTTGCACTCTTCTCAAGTGGGTTTCCCGTATACAAACCCTCGACGTACTT
GCGGTCTAAGTTATTATGAAGTTAGGGCTAATGTTCTTATCGTTAATGCTCTGATTTCCCTTTCTTCTCTATCCTTATTATGGATAATCGAGGTCAAAGTAAATACTTCG
ATGTTATCAAGCTTGCGATATTGGTCAATTAGTTAAATGAATTGTGAAGACCTAATGATCAAAACTCATGTAGAATTTTATAATTGTTGGCATTATCAGGACAACAAAAG
GTTTTGTTTGTCAAATTGAACCGAGTATTGGTGCCTTCAACTTTGTAGATTGGAAGCTACCATGTGGAGAAGTGGTGATATGATGCATTATCAAAGGAAAGTCAACATAT
CTATATGCCTTCTTTGAAAGCTATCTGAAGGGATTCATTAAAGTTACGTTCTCTTAGATGTAAGCAACTTGATGAATTTCTCGTAAAGTAAGGGTTGACATGCTAAGTAA
AGAGATTTGATGTTTTGTTTGTCACTTATAATGTTTTGTTTCTATCTAATGAGCTCTGGTGTTTTGAATGAATTTAAATGCAAGTTTTTCCTCCAGGATCGCTTTGAATA
ATTAGCTGTCACCTGCCCTTCCATTTTTATTTCTCGAGTCCTATTGATTAATCATATTACACTAAATTTGATGATATTGAATAGTTTACTAAGTTATGAT
Protein sequenceShow/hide protein sequence
MVKGRQGERVRLYVRGTILGYKRSKSNQYPNTSLLQIEGVNSKDEVSWYHGKRLAYIYKAKVKKNGSHYRCIWGKVARAHGNSGIVRAKFKSNLPPKSMGDRVRVFMYPS
NI