; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18398 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18398
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionReplication factor C subunit 1
Genome locationCarg_Chr20:654652..658731
RNA-Seq ExpressionCarg18398
SyntenyCarg18398
Gene Ontology termsGO:0006260 - DNA replication (biological process)
GO:0005663 - DNA replication factor C complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003689 - DNA clamp loader activity (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR008921 - DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal
IPR013725 - DNA replication factor RFC1, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570456.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. sororia]6.8e-7579.41Show/hide
Query:  ESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRK
        ESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRK
Subjt:  ESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRK

Query:  NPLDGVPPAVKAALTKAYKEVRFDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSAT
        NPLDGVPPAVKAALTKAYKE                                          LELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSAT
Subjt:  NPLDGVPPAVKAALTKAYKEVRFDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSAT

Query:  KRRK
        KRRK
Subjt:  KRRK

KAG7010318.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]0.0e+00100Show/hide
Query:  MAGWASLEGRPFACHGVRVTTYSLHSKSSSSMTFSGAFAPPIVKFSPTQSRHRPDDDPTLLLSLLTSYANLGQVRVDASDFSFVRWHHVLTLDLACSFIY
        MAGWASLEGRPFACHGVRVTTYSLHSKSSSSMTFSGAFAPPIVKFSPTQSRHRPDDDPTLLLSLLTSYANLGQVRVDASDFSFVRWHHVLTLDLACSFIY
Subjt:  MAGWASLEGRPFACHGVRVTTYSLHSKSSSSMTFSGAFAPPIVKFSPTQSRHRPDDDPTLLLSLLTSYANLGQVRVDASDFSFVRWHHVLTLDLACSFIY

Query:  GYPHSDLILLFAHLGLGHRDSQRRRDSSAFAIVVGEADSLCRHSPDKYGLQRALLPYFGQLGPISSVVGTNFRPTLCILSHRVTTVVRELPACCSLLERI
        GYPHSDLILLFAHLGLGHRDSQRRRDSSAFAIVVGEADSLCRHSPDKYGLQRALLPYFGQLGPISSVVGTNFRPTLCILSHRVTTVVRELPACCSLLERI
Subjt:  GYPHSDLILLFAHLGLGHRDSQRRRDSSAFAIVVGEADSLCRHSPDKYGLQRALLPYFGQLGPISSVVGTNFRPTLCILSHRVTTVVRELPACCSLLERI

Query:  LVLTSVGGVIHPRHKVVTQGIHVCSYVRAPLRGERLIDVALPRSNSAASLQQGRPPIRTYIVYGSCTRPKLVFFDSRLLCLQPLTLFLQCEWFFGRHRHD
        LVLTSVGGVIHPRHKVVTQGIHVCSYVRAPLRGERLIDVALPRSNSAASLQQGRPPIRTYIVYGSCTRPKLVFFDSRLLCLQPLTLFLQCEWFFGRHRHD
Subjt:  LVLTSVGGVIHPRHKVVTQGIHVCSYVRAPLRGERLIDVALPRSNSAASLQQGRPPIRTYIVYGSCTRPKLVFFDSRLLCLQPLTLFLQCEWFFGRHRHD

Query:  AFCFICLEYFETASSSQENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGWEKNSTFGKHMRL
        AFCFICLEYFETASSSQENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGWEKNSTFGKHMRL
Subjt:  AFCFICLEYFETASSSQENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGWEKNSTFGKHMRL

Query:  LEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVRFD
        LEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVRFD
Subjt:  LEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVRFD

Query:  PSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKRRK
        PSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKRRK
Subjt:  PSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKRRK

KAG7035906.1 Replication factor C subunit 1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-7256Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSINQEDFDTV+ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG
             R   L+                                          NE      +     QL L  + ++   VQL+LKGVENS+AKK GGRG
Subjt:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG

Query:  RGGSSQDSKKK-GGRGSGSATKRRK
        RGG SQ S+KK GGRGSGSATKR++
Subjt:  RGGSSQDSKKK-GGRGSGSATKRRK

XP_022957868.1 replication factor C subunit 1 isoform X1 [Cucurbita moschata]5.4e-7255.69Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSINQEDFDTV+ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG
             R   L+                                          N+      +     QL L  + ++   VQL+LKGVENS+AKK GGRG
Subjt:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG

Query:  RGGSSQDSKKK-GGRGSGSATKRRK
        RGG SQ S+KK GGRGSGSATKR++
Subjt:  RGGSSQDSKKK-GGRGSGSATKRRK

XP_022957869.1 replication factor C subunit 1 isoform X2 [Cucurbita moschata]5.4e-7256.48Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSINQEDFDTV+ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV--------------------------NELRLLGKS---------------CFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR
             R   L+                          N    L +S                    QL L  + ++   VQL+LKGVENS+AKK GGRGR
Subjt:  FDPSFRGQRLV--------------------------NELRLLGKS---------------CFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR

Query:  GGSSQDSKKK-GGRGSGSATKRRK
        GG SQ S+KK GGRGSGSATKR++
Subjt:  GGSSQDSKKK-GGRGSGSATKRRK

TrEMBL top hitse value%identityAlignment
A0A5A7V0R1 Replication factor C subunit 14.2e-7055.25Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPS V KDDNG+KRMDLIA AA+SIADGDIIN  I    +    Q+ +       +I   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVK VVEFMSLYSI+QEDFDTVLELSKFQGRKNPLDGV PAVKAALTKAYKE  
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFR--------GQRLVNELRLL--------------GKSCFSS-------------------CQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR
             R        G +   + R+               G++   S                    QL L ++ +    VQL+LKGVE+SSAKK GGRGR
Subjt:  FDPSFR--------GQRLVNELRLL--------------GKSCFSS-------------------CQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR

Query:  GG-SSQDSKKKGGRGSGSATKRRK
        GG +SQ S+KK GRGSGSATKR++
Subjt:  GG-SSQDSKKKGGRGSGSATKRRK

A0A6J1H1H3 Replication factor C subunit 12.6e-7255.69Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSINQEDFDTV+ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG
             R   L+                                          N+      +     QL L  + ++   VQL+LKGVENS+AKK GGRG
Subjt:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG

Query:  RGGSSQDSKKK-GGRGSGSATKRRK
        RGG SQ S+KK GGRGSGSATKR++
Subjt:  RGGSSQDSKKK-GGRGSGSATKRRK

A0A6J1H397 Replication factor C subunit 12.6e-7256.48Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSINQEDFDTV+ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV--------------------------NELRLLGKS---------------CFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR
             R   L+                          N    L +S                    QL L  + ++   VQL+LKGVENS+AKK GGRGR
Subjt:  FDPSFRGQRLV--------------------------NELRLLGKS---------------CFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR

Query:  GGSSQDSKKK-GGRGSGSATKRRK
        GG SQ S+KK GGRGSGSATKR++
Subjt:  GGSSQDSKKK-GGRGSGSATKRRK

A0A6J1JXK0 Replication factor C subunit 11.3e-7155.08Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSI+QEDFDT +ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG
             R   L+                                          N+      +     QL L  + ++   VQL+LKGVENS+AKK GGRG
Subjt:  FDPSFRGQRLV------------------------------------------NELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRG

Query:  RGGSSQDSKKK-GGRGSGSATKRRK
        RGG SQ S+KK GGRGSGSATKR++
Subjt:  RGGSSQDSKKK-GGRGSGSATKRRK

A0A6J1K6Q0 Replication factor C subunit 13.8e-7155.25Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM
        QENYINYRPSSV KDDNG+KRMDL+A AA+SIADGDIIN  I    +  L Q     +    VI   L+HG                 W  KNSTFGK+M
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHG-----------------W-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED HVHILASRESCS REHL+ ENLTLFLKRLTEPL  LP++EAVKMVV+FMSLYSI+QEDFDT +ELSKFQGRKNPLDGV PAVKAALTKAYKE R
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLVN--------ELRLL---------------------------------GKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR
             R   L+         + R+                                    +     QL L  + ++   VQL+LKGVENS+AKK GGRGR
Subjt:  FDPSFRGQRLVN--------ELRLL---------------------------------GKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGR

Query:  GGSSQDSKKK-GGRGSGSATKRRK
        GG SQ S+KK GGRGSGSATKR++
Subjt:  GGSSQDSKKK-GGRGSGSATKRRK

SwissProt top hitse value%identityAlignment
P35251 Replication factor C subunit 16.5e-1227.37Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGW-----------EKNSTFGKHMRLLEDFH
        QENYI+ +P +   D    K + L++ AADSI DGD+++S I     K    ++       SV+  +L+ G+            K+S+ GKH R+++D  
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGW-----------EKNSTFGKHMRLLEDFH

Query:  VHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAY-KEVRFDPSFR
        +H+  S  + S +  +  + L+L    L +PL      + V+ VV  M  Y + +EDF+ ++E+S + G+ +P   + P VKAA T+AY KE    P + 
Subjt:  VHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAY-KEVRFDPSFR

Query:  GQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKR
         Q +         S  S     L    +DS + + +   +E  +  K   +    S  +  K+  +G G ++K+
Subjt:  GQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKR

P35600 Replication factor C subunit 19.4e-1128.97Show/hide
Query:  HRHDAFCFICLEYFETASSS----QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVI---IAWAKKTLEQVMKFCTYKESVI--LTDLVH-
        H+H +F      +F   S +    Q+NY+   P   +KD      +  +A  AD+++ GD++   I    AW+    +         E +    T  ++ 
Subjt:  HRHDAFCFICLEYFETASSS----QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVI---IAWAKKTLEQVMKFCTYKESVI--LTDLVH-

Query:  -GW-EKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPP
         GW  KNS  GK  RL ++ H H          R  ++ +     L  +  PL K    E V   ++ M  Y + +ED D+++EL+ + G+K+PLD V  
Subjt:  -GW-EKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPP

Query:  AVKAALTKAY-KEV
         VKAALT++Y KEV
Subjt:  AVKAALTKAY-KEV

P35601 Replication factor C subunit 13.2e-1127.01Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGW-----------EKNSTFGKHMRLLEDFH
        QENY++ +P +   D    K + L++ AADSI DGD++++ I     K    ++       SV+  +L+ G+            K+S+ GKH R+++D  
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGW-----------EKNSTFGKHMRLLEDFH

Query:  VHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAY-KEVRFDPSFR
        +H+  S  + S +  +  + L+     L  PL      E  + V++ M  Y + +EDF+ ++E+S + G+ +    + P VKAA T+AY KE    P   
Subjt:  VHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAY-KEVRFDPSFR

Query:  GQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKR
          ++V   RL       S   +     ED T  + E   VE  +  K   R    S  + +K+  +G G   K+
Subjt:  GQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAKKFGGRGRGGSSQDSKKKGGRGSGSATKR

Q2R2B4 Replication factor C subunit 15.8e-4549.06Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM
        QENYINYRP +V KDD+GVKRM+ +A AA+SIAD DI+N  I  + +  L Q         S++   L+H                 GW  K ST  K++
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RLLED H HILAS+++   RE L+ + LTL L++LT+PL+ +P++EAV+ VVEFM  YS++QEDFDT++ELSKF+G  NP+DG+ PAVK+ALTKAYK+  
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLVN
             R   LVN
Subjt:  FDPSFRGQRLVN

Q9C587 Replication factor C subunit 12.6e-4540.79Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM
        QENY+NYRPS   KD+   KRMDL+A AA+SIADGDIIN  I  + +  L Q    C    S++   L+H                 GW  KNST GK+ 
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RL+ED HVH+LASRES + RE L+ + L L L RLT PL+ LP++EAV  VV+FM+ YSI+QEDFDT+LEL KF+GR+NP++GVPP VKAALTK Y E+ 
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTN-----------------------------------------------VQLELKGVENSSAKK
             R  R+ + ++L G     + +  + A++E + +                                               V+L+LKG  +S ++K
Subjt:  FDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTN-----------------------------------------------VQLELKGVENSSAKK

Query:  FGGRGRG-GSSQDS---KKKGGRGSGSATKR
          G+GRG G + D+   KK  GRGSG+  KR
Subjt:  FGGRGRG-GSSQDS---KKKGGRGSGSATKR

Arabidopsis top hitse value%identityAlignment
AT5G22010.1 replication factor C11.9e-4640.79Show/hide
Query:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM
        QENY+NYRPS   KD+   KRMDL+A AA+SIADGDIIN  I  + +  L Q    C    S++   L+H                 GW  KNST GK+ 
Subjt:  QENYINYRPSSVRKDDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVH-----------------GW-EKNSTFGKHM

Query:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR
        RL+ED HVH+LASRES + RE L+ + L L L RLT PL+ LP++EAV  VV+FM+ YSI+QEDFDT+LEL KF+GR+NP++GVPP VKAALTK Y E+ 
Subjt:  RLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKLPENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVR

Query:  FDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTN-----------------------------------------------VQLELKGVENSSAKK
             R  R+ + ++L G     + +  + A++E + +                                               V+L+LKG  +S ++K
Subjt:  FDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTN-----------------------------------------------VQLELKGVENSSAKK

Query:  FGGRGRG-GSSQDS---KKKGGRGSGSATKR
          G+GRG G + D+   KK  GRGSG+  KR
Subjt:  FGGRGRG-GSSQDS---KKKGGRGSGSATKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGGATGGGCGTCTCTTGAGGGACGCCCCTTTGCTTGTCATGGCGTGAGGGTCACAACCTACTCTCTTCATAGTAAGTCATCGTCCTCGATGACTTTCTCGGGCGC
GTTCGCCCCACCTATTGTGAAGTTCTCCCCCACTCAATCTCGGCATCGCCCCGATGACGATCCGACTCTCTTGCTCTCCCTGCTGACGTCTTATGCCAACTTGGGACAAG
TTCGAGTGGATGCTTCTGACTTCTCTTTTGTCAGGTGGCACCACGTTCTGACTCTTGACTTGGCTTGTTCCTTTATCTACGGCTATCCCCATTCGGACCTAATTCTGTTG
TTCGCCCATCTTGGACTCGGCCACCGAGACTCGCAACGTAGACGTGACTCTTCAGCGTTTGCCATAGTTGTGGGTGAGGCTGACTCTCTTTGCAGACACTCACCAGACAA
GTATGGACTTCAGAGGGCACTTTTGCCCTATTTTGGCCAACTTGGCCCCATCTCTTCAGTTGTTGGCACTAACTTTCGGCCAACTCTTTGTATTTTGTCACATCGTGTGA
CTACTGTTGTGCGTGAACTTCCAGCTTGTTGCTCACTTCTCGAGCGGATACTGGTCTTGACATCTGTTGGTGGAGTCATCCACCCTAGGCACAAGGTGGTGACTCAAGGA
ATACACGTGTGCTCGTATGTCCGAGCACCTTTACGGGGTGAGAGACTTATTGATGTTGCTCTCCCCCGCTCGAACTCAGCTGCCTCTTTGCAGCAAGGTCGTCCCCCCAT
AAGGACTTACATTGTATACGGCTCTTGCACTCGGCCGAAGCTTGTCTTCTTTGACTCTCGGCTTCTCTGCTTGCAACCACTGACATTATTCCTCCAATGTGAATGGTTCT
TTGGAAGGCACCGTCATGATGCTTTCTGTTTCATCTGTCTTGAATACTTCGAAACTGCAAGCTCTTCTCAGGAAAATTATATTAATTATAGGCCAAGCTCTGTTCGTAAG
GATGACAATGGGGTCAAACGGATGGATTTGATTGCCTGTGCAGCTGATTCCATTGCAGATGGGGATATAATCAATAGCGTGATTATTGCATGGGCAAAGAAAACGCTGGA
GCAGGTGATGAAATTCTGTACATACAAGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACT
TTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTG
CCTGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAA
TCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGATTTGATCCGTCTTTTCGAGGTCAGCGGTTAGTGAATGAGTTGCGCT
TGTTGGGCAAGTCCTGCTTCTCTAGTTGCCAATTATTCCTTGTCGCAATTATAGAAGACTCCACAAACGTGCAGTTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAG
AAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCCGGATGGGCGTCTCTTGAGGGACGCCCCTTTGCTTGTCATGGCGTGAGGGTCACAACCTACTCTCTTCATAGTAAGTCATCGTCCTCGATGACTTTCTCGGGCGC
GTTCGCCCCACCTATTGTGAAGTTCTCCCCCACTCAATCTCGGCATCGCCCCGATGACGATCCGACTCTCTTGCTCTCCCTGCTGACGTCTTATGCCAACTTGGGACAAG
TTCGAGTGGATGCTTCTGACTTCTCTTTTGTCAGGTGGCACCACGTTCTGACTCTTGACTTGGCTTGTTCCTTTATCTACGGCTATCCCCATTCGGACCTAATTCTGTTG
TTCGCCCATCTTGGACTCGGCCACCGAGACTCGCAACGTAGACGTGACTCTTCAGCGTTTGCCATAGTTGTGGGTGAGGCTGACTCTCTTTGCAGACACTCACCAGACAA
GTATGGACTTCAGAGGGCACTTTTGCCCTATTTTGGCCAACTTGGCCCCATCTCTTCAGTTGTTGGCACTAACTTTCGGCCAACTCTTTGTATTTTGTCACATCGTGTGA
CTACTGTTGTGCGTGAACTTCCAGCTTGTTGCTCACTTCTCGAGCGGATACTGGTCTTGACATCTGTTGGTGGAGTCATCCACCCTAGGCACAAGGTGGTGACTCAAGGA
ATACACGTGTGCTCGTATGTCCGAGCACCTTTACGGGGTGAGAGACTTATTGATGTTGCTCTCCCCCGCTCGAACTCAGCTGCCTCTTTGCAGCAAGGTCGTCCCCCCAT
AAGGACTTACATTGTATACGGCTCTTGCACTCGGCCGAAGCTTGTCTTCTTTGACTCTCGGCTTCTCTGCTTGCAACCACTGACATTATTCCTCCAATGTGAATGGTTCT
TTGGAAGGCACCGTCATGATGCTTTCTGTTTCATCTGTCTTGAATACTTCGAAACTGCAAGCTCTTCTCAGGAAAATTATATTAATTATAGGCCAAGCTCTGTTCGTAAG
GATGACAATGGGGTCAAACGGATGGATTTGATTGCCTGTGCAGCTGATTCCATTGCAGATGGGGATATAATCAATAGCGTGATTATTGCATGGGCAAAGAAAACGCTGGA
GCAGGTGATGAAATTCTGTACATACAAGGAGAGTGTAATTTTAACAGATTTGGTGCATGGCTGGGAAAAAAATTCAACATTTGGAAAACATATGAGGCTTTTGGAAGACT
TTCATGTTCACATTCTTGCTTCTCGCGAGTCCTGTTCATGGAGGGAACACCTACAAGCTGAGAACCTTACTCTTTTTCTAAAGAGGTTGACTGAGCCACTGCGCAAGCTG
CCTGAGAATGAAGCAGTTAAAATGGTTGTTGAGTTTATGAGTCTATATTCAATCAATCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAA
TCCATTGGATGGCGTGCCCCCTGCTGTGAAAGCTGCTCTAACAAAGGCATACAAAGAAGTAAGATTTGATCCGTCTTTTCGAGGTCAGCGGTTAGTGAATGAGTTGCGCT
TGTTGGGCAAGTCCTGCTTCTCTAGTTGCCAATTATTCCTTGTCGCAATTATAGAAGACTCCACAAACGTGCAGTTGGAATTGAAAGGCGTGGAAAATTCAAGCGCCAAG
AAATTCGGTGGCAGAGGAAGAGGAGGTAGTTCCCAGGATTCAAAGAAGAAAGGTGGGCGAGGTTCAGGATCTGCCACAAAGAGGAGAAAATGA
Protein sequenceShow/hide protein sequence
MAGWASLEGRPFACHGVRVTTYSLHSKSSSSMTFSGAFAPPIVKFSPTQSRHRPDDDPTLLLSLLTSYANLGQVRVDASDFSFVRWHHVLTLDLACSFIYGYPHSDLILL
FAHLGLGHRDSQRRRDSSAFAIVVGEADSLCRHSPDKYGLQRALLPYFGQLGPISSVVGTNFRPTLCILSHRVTTVVRELPACCSLLERILVLTSVGGVIHPRHKVVTQG
IHVCSYVRAPLRGERLIDVALPRSNSAASLQQGRPPIRTYIVYGSCTRPKLVFFDSRLLCLQPLTLFLQCEWFFGRHRHDAFCFICLEYFETASSSQENYINYRPSSVRK
DDNGVKRMDLIACAADSIADGDIINSVIIAWAKKTLEQVMKFCTYKESVILTDLVHGWEKNSTFGKHMRLLEDFHVHILASRESCSWREHLQAENLTLFLKRLTEPLRKL
PENEAVKMVVEFMSLYSINQEDFDTVLELSKFQGRKNPLDGVPPAVKAALTKAYKEVRFDPSFRGQRLVNELRLLGKSCFSSCQLFLVAIIEDSTNVQLELKGVENSSAK
KFGGRGRGGSSQDSKKKGGRGSGSATKRRK