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Carg18400 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18400
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionYABBY2-like transcription factor YAB2
Genome locationCarg_Chr20:663723..666931
RNA-Seq ExpressionCarg18400
SyntenyCarg18400
Gene Ontology termsGO:0007275 - multicellular organism development (biological process)
GO:0010158 - abaxial cell fate specification (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
InterPro domainsIPR006780 - YABBY protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570457.1 putative axial regulator YABBY 2, partial [Cucurbita argyrosperma subsp. sororia]5.1e-30100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

KAG7010320.1 Protein YABBY 2 [Cucurbita argyrosperma subsp. argyrosperma]4.2e-32100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIYI
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIYI
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIYI

XP_022943971.1 putative axial regulator YABBY 2 isoform X1 [Cucurbita moschata]5.1e-30100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

XP_022943973.1 putative axial regulator YABBY 2 isoform X2 [Cucurbita moschata]5.1e-30100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

XP_023512204.1 putative axial regulator YABBY 2 isoform X1 [Cucurbita pepo subsp. pepo]6.3e-2896.92Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMA ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDS P
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

TrEMBL top hitse value%identityAlignment
A0A6J1FT58 putative axial regulator YABBY 2 isoform X12.5e-30100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

A0A6J1FXJ5 putative axial regulator YABBY 2 isoform X22.5e-30100Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

A0A6J1J940 putative axial regulator YABBY 2 isoform X34.0e-2895.38Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMA ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGAS+QVLPPQDS P
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

A0A6J1JFK2 putative axial regulator YABBY 2 isoform X24.0e-2895.38Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMA ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGAS+QVLPPQDS P
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

A0A6J1JHL4 putative axial regulator YABBY 2 isoform X14.0e-2895.38Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP
        MSLEMMA ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGAS+QVLPPQDS P
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHP

SwissProt top hitse value%identityAlignment
Q01JG2 Protein YABBY 54.1e-1474.42Show/hide
Query:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNM
        E++CYVHCNFC+TILAV VPC+++F  VTVRCGHC+NLLSVN+
Subjt:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNM

Q10FZ7 Protein YABBY 21.0e-1769.64Show/hide
Query:  APERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQD
        APE VCYVHCNFCNTI AVSVP N+M  +VTVRCGHC++LLSVN+   +Q LP +D
Subjt:  APERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQD

Q2QM17 Protein YABBY 68.8e-1760.94Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSH
        MS ++   E+VCYVHCNFCNTILAVSVP N+M  +VTVRCGHC+NLLSVN+   +   P    H
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSH

Q8GW46 Axial regulator YABBY 53.4e-1663.79Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL
        M+  +MA E++CY+ CNFCN ILAV+VPC+++F +VTVRCGHC+NL SVNM A+LQ L
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL

Q9XFB0 Putative axial regulator YABBY 25.7e-1668.33Show/hide
Query:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIY
        ERVCYVHC+FC TILAVSVP  ++FTLVTVRCGHC+NLLS+N+G SL     Q S P I+
Subjt:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIY

Arabidopsis top hitse value%identityAlignment
AT1G08465.1 Plant-specific transcription factor YABBY family protein4.1e-1768.33Show/hide
Query:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIY
        ERVCYVHC+FC TILAVSVP  ++FTLVTVRCGHC+NLLS+N+G SL     Q S P I+
Subjt:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIY

AT2G26580.1 plant-specific transcription factor YABBY family protein2.4e-1763.79Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL
        M+  +MA E++CY+ CNFCN ILAV+VPC+++F +VTVRCGHC+NL SVNM A+LQ L
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL

AT2G26580.2 plant-specific transcription factor YABBY family protein2.4e-1763.79Show/hide
Query:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL
        M+  +MA E++CY+ CNFCN ILAV+VPC+++F +VTVRCGHC+NL SVNM A+LQ L
Subjt:  MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVL

AT2G45190.1 Plant-specific transcription factor YABBY family protein1.5e-1167.44Show/hide
Query:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNM
        + +CYV CNFC TILAV+VP  ++F  VTVRCG C+NLLSVNM
Subjt:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNM

AT4G00180.1 Plant-specific transcription factor YABBY family protein9.4e-1460.78Show/hide
Query:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLP
        +++CYVHC+FC+T+LAVSVP +++F  VTVRCGHCSNLLSV +     +LP
Subjt:  ERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTGGAGATGATGGCACCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAATACCATTTTAGCGGTAAGTGTTCCATGCAACAACATGTTCACACTGGTAAC
TGTGAGATGCGGCCATTGCTCAAATCTGCTGTCTGTTAACATGGGAGCTTCTCTTCAAGTTCTTCCTCCTCAAGATTCCCACCCGGTAATATATATATGA
mRNA sequenceShow/hide mRNA sequence
TCTTCCTTCCCATTTCTTTTCTCTTTTCCCCTTTCATCTTCTTCTTCTTCTCATACATCAAAAAAAAAAAAAAAAAAAAAAAAATTTTTTTAAAAAATGAGATTTTTAGT
TTCTTAAATTTTGTTAAAAAGGGTGTGTTTTTAATTCAGCCTTTATATATATATATATACTCGCGAAGAAGAAATGTCACTGGAGATGATGGCACCAGAACGTGTTTGTT
ATGTTCACTGCAACTTCTGCAATACCATTTTAGCGGTAAGTGTTCCATGCAACAACATGTTCACACTGGTAACTGTGAGATGCGGCCATTGCTCAAATCTGCTGTCTGTT
AACATGGGAGCTTCTCTTCAAGTTCTTCCTCCTCAAGATTCCCACCCGGTAATATATATATGAATCGTATGATATTGTCCACTCCTTTGAGTATAAGCTCTCATGGCTCT
GTACTTTCTCAAGAAGCTTCATGTCAATAGAGAGAGTATTCTTTGATTATAAATATATTATTTATTTATTTATTTAATTAAAGAGATATTTTGTTTGGTGATGTGTGTTA
GGGTAATAAACAGCAGCAGGTGAGTGGTGGGGATTGGAGCAAGGACAGAGGCTCTTCTTCTTCTTCCTCTTCTTCCTCTTCAAAATGCACTAAAATTGCCTCTCTTGATT
CTGCTGAACGTGACCAACACAGAATCCCTCCTATTCGCCCACCAGAGAAGAAACAGCGTGTTCCTTCAGCATATAATAGGTTCATCAAAGAGGAAATCCAAAGGATTAAG
GCGAACAATCCCGACATTAGCCACAGAGAAGCCTTTAGCACCGCCGCTAAAAATTGGGCACATTATCCTCACATCCGTTGTGGGCAGAAGGTGGATGGAAACAAGCAAAC
AAAATAAGCTTGAATTTGACCGGAGATCATCACAGTCCATCCGATTATCCAATGGGGTTCTGCCACCTGTTAATTCTAGAGATGATGATGACGTGTCAATAGATTAAATA
CTAAATAAAACATCTTTTTTTGTTTTTTTAATTAATGTGTATTAATTTAGATTCTATTATTTCCAACAAAAATTGAGGTTGACGAAGTCCTCCTGCCCTGACCCTATAGG
AAAATAAATTGCTTTGATAACCTCACCCCGCTCTCCCATGTCCTTTAAATACGTGTGATGTAATAACAAGTGAGATTAATGTTATTACA
Protein sequenceShow/hide protein sequence
MSLEMMAPERVCYVHCNFCNTILAVSVPCNNMFTLVTVRCGHCSNLLSVNMGASLQVLPPQDSHPVIYI