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Carg18434 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18434
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S acidic ribosomal protein family
Genome locationCarg_Chr20:857293..858557
RNA-Seq ExpressionCarg18434
SyntenyCarg18434
Gene Ontology termsGO:0002182 - cytoplasmic translational elongation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001859 - Trypanosoma cruzi ribosomal protein P2-like
IPR027534 - Ribosomal protein L12/P1/P2 family
IPR038716 - Ribosomal protein P1/P2, N-terminal domain
IPR044076 - Ribosomal protein P2


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570492.1 60S acidic ribosomal protein P2B, partial [Cucurbita argyrosperma subsp. sororia]5.7e-50100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

KAG7010354.1 60S acidic ribosomal protein P2B [Cucurbita argyrosperma subsp. argyrosperma]5.7e-50100Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022944125.1 60S acidic ribosomal protein P2B-like [Cucurbita moschata]1.7e-4999.13Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_022986046.1 60S acidic ribosomal protein P2B-like [Cucurbita maxima]1.7e-4999.13Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

XP_023512871.1 60S acidic ribosomal protein P2B-like [Cucurbita pepo subsp. pepo]4.8e-4999.13Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAA AAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

TrEMBL top hitse value%identityAlignment
A0A6J1DJB9 60S acidic ribosomal protein P2B-like1.6e-4592.17Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPG DDVK ILNSVG EVDEDRI+SLLSQVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE+KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKE+SDDD+GFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1FYH3 60S acidic ribosomal protein P2B-like8.0e-5099.13Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGG AGGGAAPAAAEQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1GZW9 60S acidic ribosomal protein P2B-like2.3e-4493.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVD DRI+SLL+QVKGKDITELIASGREKLASVPSGGGAV +AAPAGGAAGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1J9Z4 60S acidic ribosomal protein P2B-like8.0e-5099.13Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAA EQKKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

A0A6J1KA82 60S acidic ribosomal protein P2B-like2.5e-4392.17Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVLGGNTSPGLDDVK ILNSVGAEVDE+RI+SLL+QVKGKDITELI SGREKLASVPSGGGAV +AA AGGAAGGGAAPAAAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

SwissProt top hitse value%identityAlignment
O24415 60S acidic ribosomal protein P2B4.1e-3573.91Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKV+AAYLLAVLGGNTSP  DDVK IL SVGAE DE++++ LL+++K KDITE+IA+GRE+L+SVPSGGGA+ + APA   AGGGAAP A E KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESD+DMGFSLFD
Subjt:  EKEESDDDMGFSLFD

P41099 60S acidic ribosomal protein P26.2e-3170.43Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKV+AA+LLA+LGGNTSP  +D+K IL SVGA+ D+D+I+ LLSQVKGKDITELIASGRE+LASVPSGGG V +AA AGG  G   A AA E KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
          EESD+++GFSLFD
Subjt:  EKEESDDDMGFSLFD

P46252 60S acidic ribosomal protein P2A8.6e-3373.04Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MK VAAYLLAVL GN SP  DD+  IL SVG EVD ++++ LLSQ+ GKDITELIA+GREK ASVP GGG V +AA A   A GGAAP AAE KKEEKVE
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLFD
Subjt:  EKEESDDDMGFSLFD

P51407 60S acidic ribosomal protein P2-13.1e-3068.1Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPS GGG V +A+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

Q9SLF7 60S acidic ribosomal protein P2-25.2e-3066.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

Arabidopsis top hitse value%identityAlignment
AT2G27710.1 60S acidic ribosomal protein family3.7e-3166.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.2 60S acidic ribosomal protein family3.7e-3166.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27710.3 60S acidic ribosomal protein family3.7e-3166.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKVVAAYLLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPSGGG     A A    GGG   +AAE KKEEK E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD

AT2G27720.1 60S acidic ribosomal protein family2.2e-3168.1Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKV
        MKVVAA+LLAVL G  SP   D+K IL SVGAE ++ +I+ LL +VKGKD+ ELIA+GREKLASVPS GGG V +A+   G  GGG AP AAE KKEEK 
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPS-GGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKV

Query:  EEKEESDDDMGFSLFD
        EEKEESDDDMGFSLF+
Subjt:  EEKEESDDDMGFSLFD

AT3G44590.2 60S acidic ribosomal protein family2.4e-3066.96Show/hide
Query:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE
        MKV AA+LLAVLGGN +P  D++K I+ +VGA+VD + I+ LL +V GKDI ELIASGREKLASVPSGGG    AAP+ G  GG AAPA   +KKE K E
Subjt:  MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVE

Query:  EKEESDDDMGFSLFD
        EKEESDDDMGFSLF+
Subjt:  EKEESDDDMGFSLFD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGTATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGA
CAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCTAGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCA
TCGCCGCCCCTGCCGGCGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGGTCGAGGAGAAAGAAGAATCTGACGATGATATGGGT
TTCAGCCTCTTTGATTGA
mRNA sequenceShow/hide mRNA sequence
TCTGGTTTTTAACATTTGATGGTGTCGAAGCAGAAATGAAGGTGGTCGCTGCGTATTTGTTGGCCGTACTCGGTGGCAACACCAGCCCCGGACTCGATGATGTGAAGTGT
ATTCTTAATTCAGTTGGGGCTGAGGTGGATGAGGACAGGATTGACTCGCTATTATCCCAAGTGAAAGGAAAGGATATCACAGAGTTGATAGCCTCCGGACGGGAGAAGCT
AGCGTCAGTTCCATCTGGTGGCGGTGCAGTCGGCATCGCCGCCCCTGCCGGCGGTGCCGCTGGTGGTGGTGCAGCACCAGCCGCAGCCGAGCAGAAGAAAGAGGAGAAGG
TCGAGGAGAAAGAAGAATCTGACGATGATATGGGTTTCAGCCTCTTTGATTGAGCAACTCATTTGGCGTCATTATCAGTTAGTATTTTTGTTGCATTTGGTTCATGTTTC
AGGGCTGAGGTAGCTTGGTAGAGGTTTTTCTTTTTTGACTTGTTTGGAACTCAAAAATTTTGATAGATGAATTTCAACATTTCAGTGATGACCACCATTTCAATTGTGAG
ATTAATGATTCCCAAATGGTTCTTAATCTCATTGTGCATGATTAATTTTGGCTATGCTAATTCCAATCATTGTTTATTTCATCATTTTTTTTCACTCTGTTCTATGAGTG
TGCGATGTGCGGTATGCCACAGAATTAGAAAATATCCATCACTTTTCCTCTCTGCCTTCGACCAACGATTTCTATGATTTCTTGCCCTCTTGTCACTGTAGAGTAAAAGA
TTTTATTCATGCATGGTGCATACGTTTAAAAGATTTATCATATGATTTTTCTATTTTAGTACATGCACATAGAACTATTATATTAGATTTTTTTTTTTTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MKVVAAYLLAVLGGNTSPGLDDVKCILNSVGAEVDEDRIDSLLSQVKGKDITELIASGREKLASVPSGGGAVGIAAPAGGAAGGGAAPAAAEQKKEEKVEEKEESDDDMG
FSLFD