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Carg18488 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18488
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein SKIP34
Genome locationCarg_Chr07:2582863..2583153
RNA-Seq ExpressionCarg18488
SyntenyCarg18488
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594909.1 Protein SKIP34, partial [Cucurbita argyrosperma subsp. sororia]2.1e-42100Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

XP_008440533.1 PREDICTED: protein SKIP34 [Cucumis melo]1.0e-3183.33Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

XP_011657944.1 protein SKIP34 [Cucumis sativus]4.5e-3283.33Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

XP_022978829.1 protein SKIP34 [Cucurbita maxima]2.0e-3281.25Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH RS F  S+ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P++RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

XP_023544310.1 protein SKIP34 [Cucurbita pepo subsp. pepo]1.5e-3282.29Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH RS F  ++ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSRLLEEMKRLV VMEILENYLKR+YRDRQEYVVRLL+PV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

TrEMBL top hitse value%identityAlignment
A0A0A0KIR5 Uncharacterized protein2.2e-3283.33Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH R  F  SL PYQTSVPENG  SVVDN+RGRL E E RLA VRARE ELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

A0A1S3B1B8 protein SKIP344.8e-3283.33Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

A0A5D3CN14 Protein SKIP344.8e-3283.33Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH R  F  S  PYQTSVPENG ASVVDN+RGRL E E RLA VRARE ELSRLLEEMKRLVSVMEILENYLKRQY DRQEYVVRLLSPV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

A0A6J1GF20 protein SKIP341.1e-3182.47Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPEN-GDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH RS F  S+ P QTSVPEN GDASVVDN+RGRLAE ESRLA VRARE  LSRLLEEMKRLVSVMEILENYLKR+Y DRQEYVVRLL+PV+RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPEN-GDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

A0A6J1IV54 protein SKIP349.7e-3381.25Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MCNGH RS F  S+ P QTSVPENGDASVVDN+RGRLAE ESRLA VRARE  LSR+LEEMKRLVSVMEIL+NYLKR+YRDRQEYVVRLL+P++RK
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

SwissProt top hitse value%identityAlignment
Q8GWU7 Protein SKIP346.7e-1548.96Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MC GH +S    S    ++   +  D SVVD++R RLAE E+RL   RARE ELSR LE MKR VSVMEI+E +L+R+++++++ + RL SPV+ K
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK

Arabidopsis top hitse value%identityAlignment
AT5G65495.1 unknown protein4.8e-1648.96Show/hide
Query:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK
        MC GH +S    S    ++   +  D SVVD++R RLAE E+RL   RARE ELSR LE MKR VSVMEI+E +L+R+++++++ + RL SPV+ K
Subjt:  MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAACGGCCATCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATT
GGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACT
ACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTCGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAACGGCCATCGCCGATCTTCGTTTGGAGATAGCCTTTTCCCCTACCAAACCTCCGTACCGGAAAACGGCGATGCTTCTGTCGTGGATAATATACGGGGAAGATT
GGCGGAAGCAGAGTCGCGACTGGCTGTAGTTCGGGCTCGGGAGGTGGAGCTCAGCCGCCTCTTGGAGGAAATGAAACGTTTAGTCTCTGTGATGGAGATTCTCGAGAACT
ACCTGAAACGGCAGTATCGTGACCGCCAAGAGTATGTGGTTCGTCTTCTCTCCCCTGTAGCTCGAAAATAG
Protein sequenceShow/hide protein sequence
MCNGHRRSSFGDSLFPYQTSVPENGDASVVDNIRGRLAEAESRLAVVRAREVELSRLLEEMKRLVSVMEILENYLKRQYRDRQEYVVRLLSPVARK