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Carg18572 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18572
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGibberellin regulated protein
Genome locationCarg_Chr07:3023514..3023907
RNA-Seq ExpressionCarg18572
SyntenyCarg18572
Gene Ontology termsGO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0005576 - extracellular region (cellular component)
InterPro domainsIPR003854 - Gibberellin regulated protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026958.1 Snakin-1, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-46100Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_022963307.1 peamaclein-like [Cucurbita moschata]9.1e-4698.94Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSGSLSLVLVSLVLSSFLLQHAIADS ATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_023003134.1 peamaclein-like [Cucurbita maxima]7.7e-4595.74Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSGSLSLVLVSL+LSSFLL HAIADSSATY PSFCDSKCGARCLNAGVKDRC+KYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_031742788.1 peamaclein-like isoform X2 [Cucumis sativus]1.2e-4088.3Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++LVL+SL+LSSF LQ+A ADSS TYAPS CDSKCG RCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

XP_038880848.1 peamaclein-like [Benincasa hispida]6.7e-4188.3Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S+ LVL+SL+LSSFLLQ+AIADSS TYAPS CDSKCG RCLNAGVKDRCLKYCG+CCQQC CVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

TrEMBL top hitse value%identityAlignment
A0A0A0KLG3 Uncharacterized protein4.0e-3986.32Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAP-SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++LVL+SL+LSSF LQ+A ADSS TYAP   CDSKCG RCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAP-SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A1S3B1M5 peamaclein-like6.2e-4086.17Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKS S++LVL+S +LSSF LQ+  ADSS TYAPS CDSKCG RCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A5N6QNF2 Uncharacterized protein5.2e-3169Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAP------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK    +L+L+S++L S  LQ A+AD     AP      SFCDSKCGARC NAGVKDRCL+YCG+CC QCKCVPSGTYGNKSECPCYRD LNSKGK+KCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAP------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A6J1HEX9 peamaclein-like4.4e-4698.94Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSGSLSLVLVSLVLSSFLLQHAIADS ATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

A0A6J1KSF0 peamaclein-like3.7e-4595.74Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MKSGSLSLVLVSL+LSSFLL HAIADSSATY PSFCDSKCGARCLNAGVKDRC+KYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

SwissProt top hitse value%identityAlignment
O80641 Gibberellin-regulated protein 81.4e-2053.93Show/hide
Query:  LSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        + LV+V   + S LL  + +  S+  A S C  KC  RC  AG  + CLKYC +CCQ+C CVPSGT+G+K ECPCYRD  NSKG SKCP
Subjt:  LSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

O82328 Gibberellin-regulated protein 75.0e-2353.61Show/hide
Query:  SLVLVSLVLSSFLLQHAIADSSATYAP---------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        SL+L+S  L+S  +  A    +   AP          +C  KC  RC  AG+KDRCLKYCG+CC+ C+CVPSGTYGNK EC CYRDKL+SKG  KCP
Subjt:  SLVLVSLVLSSFLLQHAIADSSATYAP---------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

P86888 Peamaclein2.0e-2475.41Show/hide
Query:  SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        SFCDSKCG RC  AG ++RCLKYCG+CC++C CVPSGTYGNK ECPCYRD  NSKG  KCP
Subjt:  SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

Q8LFM2 Gibberellin-regulated protein 103.3e-2254.74Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCK-CVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK  ++ ++++SL+++S L   + ADSS       C  KC  RC  AG +DRCLKYC +CC++C  CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCK-CVPSGTYGNKSECPCYRDKLNSKGKSKCP

Q948Z4 Snakin-16.2e-2965.96Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK   L+L+LV+LV++  L+Q  +A S      SFCDSKC  RC  AG+ DRCLKYCG+CC++CKCVPSGTYGNK ECPCYRDK NSKGKSKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

Arabidopsis top hitse value%identityAlignment
AT1G10588.1 Gibberellin-regulated family protein1.6e-1954.65Show/hide
Query:  LVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAG-VKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        ++SL+L+S     + ADSSA      C  KC  RC  A    + CL+ C +CCQ+C CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  LVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAG-VKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT1G10588.2 Gibberellin-regulated family protein5.9e-1953.49Show/hide
Query:  LVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAG-VKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        ++SL+L+S     + ADSS       C  KC  RC  A    + CL+ C +CCQ+C CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  LVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAG-VKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT2G14900.1 Gibberellin-regulated family protein3.6e-2453.61Show/hide
Query:  SLVLVSLVLSSFLLQHAIADSSATYAP---------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        SL+L+S  L+S  +  A    +   AP          +C  KC  RC  AG+KDRCLKYCG+CC+ C+CVPSGTYGNK EC CYRDKL+SKG  KCP
Subjt:  SLVLVSLVLSSFLLQHAIADSSATYAP---------SFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT2G39540.1 Gibberellin-regulated family protein9.8e-2253.93Show/hide
Query:  LSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP
        + LV+V   + S LL  + +  S+  A S C  KC  RC  AG  + CLKYC +CCQ+C CVPSGT+G+K ECPCYRD  NSKG SKCP
Subjt:  LSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP

AT5G59845.1 Gibberellin-regulated family protein2.3e-2354.74Show/hide
Query:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCK-CVPSGTYGNKSECPCYRDKLNSKGKSKCP
        MK  ++ ++++SL+++S L   + ADSS       C  KC  RC  AG +DRCLKYC +CC++C  CVPSGTYGNK ECPCYRD  NSKG SKCP
Subjt:  MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCK-CVPSGTYGNKSECPCYRDKLNSKGKSKCP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGTCTGGTTCTCTCAGTTTGGTTCTTGTTTCATTGGTTCTGAGCTCCTTCCTCCTCCAACATGCCATTGCTGATTCCTCTGCAACCTATGCTCCAAGTTTTTGTGA
TTCAAAATGTGGGGCAAGATGTTTGAATGCAGGGGTGAAGGACAGATGTCTTAAGTATTGTGGACTCTGCTGCCAACAATGTAAGTGTGTGCCCTCTGGAACCTATGGAA
ACAAGTCAGAATGTCCTTGCTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGTCTGGTTCTCTCAGTTTGGTTCTTGTTTCATTGGTTCTGAGCTCCTTCCTCCTCCAACATGCCATTGCTGATTCCTCTGCAACCTATGCTCCAAGTTTTTGTGA
TTCAAAATGTGGGGCAAGATGTTTGAATGCAGGGGTGAAGGACAGATGTCTTAAGTATTGTGGACTCTGCTGCCAACAATGTAAGTGTGTGCCCTCTGGAACCTATGGAA
ACAAGTCAGAATGTCCTTGCTATAGAGACAAGTTGAACTCCAAGGGAAAATCTAAATGCCCTTGA
Protein sequenceShow/hide protein sequence
MKSGSLSLVLVSLVLSSFLLQHAIADSSATYAPSFCDSKCGARCLNAGVKDRCLKYCGLCCQQCKCVPSGTYGNKSECPCYRDKLNSKGKSKCP