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Carg18580 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18580
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein NUCLEAR FUSION DEFECTIVE 6
Genome locationCarg_Chr12:11656134..11658700
RNA-Seq ExpressionCarg18580
SyntenyCarg18580
Gene Ontology termsNA
InterPro domainsIPR043459 - NFD6/NOXY2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586435.1 hypothetical protein SDJN03_19168, partial [Cucurbita argyrosperma subsp. sororia]4.6e-4098.99Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAI+AARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

KAG7021289.1 hypothetical protein SDJN02_17977 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-40100Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_022938270.1 uncharacterized protein LOC111444407 [Cucurbita moschata]5.1e-3998.99Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_022966032.1 uncharacterized protein LOC111465737 [Cucurbita maxima]2.5e-3894.95Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSR+SSRLHSLASKLNKRSSSSD SPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

XP_023538189.1 uncharacterized protein LOC111799036 [Cucurbita pepo subsp. pepo]2.3e-3997.98Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSD SPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

TrEMBL top hitse value%identityAlignment
A0A6J1DYI4 uncharacterized protein LOC1110242171.0e-3285.86Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLA KL K+  SS+ SP KS+CQS+ SA STSR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1FCN7 uncharacterized protein LOC1114444072.5e-3998.99Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKST QSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1G399 uncharacterized protein LOC1114503804.5e-3386.87Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS CQS+ SA STSR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1HLX3 uncharacterized protein LOC1114657371.2e-3894.95Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSR+SSRLHSLASKLNKRSSSSD SPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIA+ARLISSL IESRGWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

A0A6J1KDE2 uncharacterized protein LOC1114938761.7e-3285.86Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        MASL+AVSRLSSRL SLA KLNKRS SS+ SPFKS+CQS+ SA S SR+SCTSRLPLELSSQGSLMPLHSAIAAARLISSL+IES+GWGLVPQGISMPL
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G55205.1 unknown protein2.4e-1857.43Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP
        MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+ELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQGISMP
Subjt:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP

Query:  L
        L
Subjt:  L

AT1G55205.2 unknown protein1.1e-1555.1Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGIS
        MAS   + RLSS++HSL  KL+K +   SS  SP KS+  S     +TSR++ + RLP+ELS   S++PLHSAIA+ARLISSL++ES+ WGLVPQG S
Subjt:  MASLKAVSRLSSRLHSLASKLNKRS--SSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGIS

AT3G13674.1 unknown protein9.3e-1551.49Show/hide
Query:  MASLKAVSRLSSRLHSLASKLNKRSS--SSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP
        MAS + + R SSRL SL   L+ +++  SS  SP KS      S+ ++ RL+ +SRLP+ELS   S++PLHSAIA++RL+SSL++ES+ WGLVPQG+S+P
Subjt:  MASLKAVSRLSSRLHSLASKLNKRSS--SSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMP

Query:  L
        L
Subjt:  L

AT4G39300.1 unknown protein1.5e-0437.37Show/hide
Query:  ASLKAVSR-LSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL
        ++L A SR L SR  ++  K      ++  SPF S  QS         +   SR+   L S  +++PLHSA+A+ARL SS+A +S  W L+ QG++ PL
Subjt:  ASLKAVSR-LSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTCATCTTCTGATCAATCTCCGTTTAAATCGACTTG
TCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGGGGTCACTGATGCCACTGCACAGTGCCATAGCTG
CAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTATGA
mRNA sequenceShow/hide mRNA sequence
TTCCATTACAGTTCAAGCTTAAGGAGGTCTTCAATGGCGTCCTTGAAGGCAGTCTCTCGGTTATCATCTCGCCTGCACTCTCTTGCTTCGAAGCTCAACAAAAGATCTTC
ATCTTCTGATCAATCTCCGTTTAAATCGACTTGTCAATCTCGTCTCTCCGCACCTTCTACATCGCGTCTTTCTTGCACTTCGCGGTTACCATTGGAGTTGAGCAGCCAGG
GGTCACTGATGCCACTGCACAGTGCCATAGCTGCAGCAAGATTGATCTCGAGTCTGGCCATTGAATCTCGAGGATGGGGTTTAGTTCCTCAGGGTATTTCAATGCCTTTA
TGACAGTTTCGGTTTGCAGGTAGTTGTTCTCTATAGTTTTTCTGTTTGTTGACAATTTTTTAGTTTCTTTTTACTTTTAGCTCCCTACAAGAATATAAATCCTCAATCAT
CGTCTCAGAA
Protein sequenceShow/hide protein sequence
MASLKAVSRLSSRLHSLASKLNKRSSSSDQSPFKSTCQSRLSAPSTSRLSCTSRLPLELSSQGSLMPLHSAIAAARLISSLAIESRGWGLVPQGISMPL