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Carg18595 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18595
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin-protein ligase RING1-like
Genome locationCarg_Chr12:11743676..11744044
RNA-Seq ExpressionCarg18595
SyntenyCarg18595
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586449.1 E3 ubiquitin-protein ligase, partial [Cucurbita argyrosperma subsp. sororia]9.6e-6499.18Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
        MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVAD PTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC

Query:  CPLCRCHVSSDNKSETAKPVQV
        CPLCRCHVSSDNKSETAKPVQV
Subjt:  CPLCRCHVSSDNKSETAKPVQV

KAG7021303.1 E3 ubiquitin-protein ligase RING1-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-64100Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
        MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC

Query:  CPLCRCHVSSDNKSETAKPVQV
        CPLCRCHVSSDNKSETAKPVQV
Subjt:  CPLCRCHVSSDNKSETAKPVQV

XP_022938297.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita moschata]1.3e-6399.18Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
        MAAVLPEATRSAFAA YIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC

Query:  CPLCRCHVSSDNKSETAKPVQV
        CPLCRCHVSSDNKSETAKPVQV
Subjt:  CPLCRCHVSSDNKSETAKPVQV

XP_022965415.1 E3 ubiquitin-protein ligase RNF181-like [Cucurbita maxima]9.3e-5995.12Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGD
        MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ IITEPPSVVV+DLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQ+CISSWLSV GD
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGD

Query:  CCPLCRCHVSSDNKSETAKPVQV
        CCPLCRCHVSSDNK ET KPVQV
Subjt:  CCPLCRCHVSSDNKSETAKPVQV

XP_023537996.1 E3 ubiquitin-protein ligase RING1-like [Cucurbita pepo subsp. pepo]4.0e-6299.18Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
        MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSV GDC
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC

Query:  CPLCRCHVSSDNKSETAKPVQV
        CPLCRCHVSSDNKSETAKPVQV
Subjt:  CPLCRCHVSSDNKSETAKPVQV

TrEMBL top hitse value%identityAlignment
A0A0A0LEZ1 RING-type domain-containing protein5.2e-3968.97Show/hide
Query:  ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTV-VTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRC
        AT + +AASYIMD+ESMFDLDTVLTGADD+Y    +  PP V+VA+LPTV   DDVCAVCME+F  DEGGKQIPCGHVYHQ+C+SSWLS+  D CPLCRC
Subjt:  ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTV-VTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRC

Query:  HVSSDNKSETAKPVQV
        H++  +K+ET+K VQV
Subjt:  HVSSDNKSETAKPVQV

A0A5A7V793 RING-H2 finger protein ATL5-like3.0e-3971.3Show/hide
Query:  ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCH
        AT +  AA YIMD+ESMFDLDTVL+GADD+Y       PP VVVADLPTV TDD CAVCME+F  DEGGKQIPCGHVYHQ+CISSWLSV GD CPLCR H
Subjt:  ATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCH

Query:  VSSDNKSETAKPVQV
        ++  +K+ET+K VQV
Subjt:  VSSDNKSETAKPVQV

A0A6J1DM93 E3 ubiquitin-protein ligase RHA1B-like1.2e-2458.47Show/hide
Query:  AVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPS-VVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCC
        AVL E TR+  AA+Y M+L  +FDLD VL+G DD+    +     S  +VADLPTVV  DVCAVC E+FR+DEGGKQIPCGHVYH+ CISSWL+V  DCC
Subjt:  AVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPS-VVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCC

Query:  PLCRCHVSSDNKSETAKP
        PLCR  V       T+ P
Subjt:  PLCRCHVSSDNKSETAKP

A0A6J1FDN7 E3 ubiquitin-protein ligase RING1-like6.1e-6499.18Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
        MAAVLPEATRSAFAA YIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDC

Query:  CPLCRCHVSSDNKSETAKPVQV
        CPLCRCHVSSDNKSETAKPVQV
Subjt:  CPLCRCHVSSDNKSETAKPVQV

A0A6J1HNM2 E3 ubiquitin-protein ligase RNF181-like4.5e-5995.12Show/hide
Query:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGD
        MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ IITEPPSVVV+DLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQ+CISSWLSV GD
Subjt:  MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQ-IITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGD

Query:  CCPLCRCHVSSDNKSETAKPVQV
        CCPLCRCHVSSDNK ET KPVQV
Subjt:  CCPLCRCHVSSDNKSETAKPVQV

SwissProt top hitse value%identityAlignment
O00237 E3 ubiquitin-protein ligase RNF1031.0e-0751.16Show/hide
Query:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR
        C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Subjt:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR

Q8LPN7 E3 ubiquitin-protein ligase RING1-like2.7e-0843.59Show/hide
Query:  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN
        T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL +  + CP+CR  + +D+
Subjt:  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN

Q9EPZ8 E3 ubiquitin-protein ligase RNF1031.0e-0751.16Show/hide
Query:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR
        C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Subjt:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR

Q9M622 Receptor homology region, transmembrane domain- and RING domain-containing protein 13.5e-0837.04Show/hide
Query:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS
        + CA+C+E++R  E  + +PC H +H  CI SWL+  G  CP+C+  + ++  S
Subjt:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS

Q9R1W3 E3 ubiquitin-protein ligase RNF1031.0e-0751.16Show/hide
Query:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR
        C VC+E F        +PCGHV+HQ CI  WL+ G  CCP+CR
Subjt:  CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCR

Arabidopsis top hitse value%identityAlignment
AT1G68180.1 RING/U-box superfamily protein1.0e-1035.71Show/hide
Query:  FDLDTVLTGADDYYNDQI----ITEPP---SVVVADLPTVVTDD------VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVS
        F+ D ++   D+ + D +    I  PP   S + A    ++TD+      VCA+C EEF   E GK++ C H+YH +CI SWL++  + CP+CR  V+
Subjt:  FDLDTVLTGADDYYNDQI----ITEPP---SVVVADLPTVVTDD------VCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVS

AT3G02340.1 RING/U-box superfamily protein5.5e-0933.33Show/hide
Query:  LESMFDLDTVLTGADDYYNDQIITEPPSV--VVADLPTVVT--------DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSS
        L  MFD +T + G            PP+   V+ DLP V          ++VCAVC +E   +E  +++PC H YH  CI  WL +  + CP+CR  + +
Subjt:  LESMFDLDTVLTGADDYYNDQIITEPPSV--VVADLPTVVT--------DDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSS

Query:  DN
        D+
Subjt:  DN

AT3G19950.1 RING/U-box superfamily protein1.9e-0943.59Show/hide
Query:  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN
        T P S    D LPTV VT D+       CAVCM+EF      KQ+PC HV+HQ C+  WL +  + CP+CR  + +D+
Subjt:  TEPPSVVVAD-LPTV-VTDDV-------CAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDN

AT5G66160.1 receptor homology region transmembrane domain ring H2 motif protein 12.5e-0937.04Show/hide
Query:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS
        + CA+C+E++R  E  + +PC H +H  CI SWL+  G  CP+C+  + ++  S
Subjt:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS

AT5G66160.2 receptor homology region transmembrane domain ring H2 motif protein 12.5e-0937.04Show/hide
Query:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS
        + CA+C+E++R  E  + +PC H +H  CI SWL+  G  CP+C+  + ++  S
Subjt:  DVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSSDNKS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTGTCTTGCCGGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCCGACGACTA
TTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGAGCGGATG
AAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCCGTCGGCGGCGACTGTTGCCCGCTCTGCCGCTGCCACGTCTCCTCC
GACAATAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTGTCTTGCCGGAAGCAACAAGATCAGCTTTTGCAGCGAGCTACATCATGGACCTTGAATCGATGTTCGATCTCGACACGGTCCTCACCGGTGCCGACGACTA
TTATAACGACCAGATCATCACAGAGCCGCCGTCCGTGGTGGTTGCCGATTTGCCAACGGTGGTCACAGACGACGTATGTGCAGTTTGTATGGAGGAATTCCGAGCGGATG
AAGGTGGTAAACAGATCCCCTGCGGTCATGTGTACCATCAAACTTGTATATCCTCATGGCTCTCCGTCGGCGGCGACTGTTGCCCGCTCTGCCGCTGCCACGTCTCCTCC
GACAATAAATCGGAAACTGCTAAACCCGTTCAGGTTTAG
Protein sequenceShow/hide protein sequence
MAAVLPEATRSAFAASYIMDLESMFDLDTVLTGADDYYNDQIITEPPSVVVADLPTVVTDDVCAVCMEEFRADEGGKQIPCGHVYHQTCISSWLSVGGDCCPLCRCHVSS
DNKSETAKPVQV