CuGenDBv2

Gene ID	Carg18638
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Photosystem II PsbX
Genome location	Carg_Chr12:11925010..11925381
RNA-Seq Expression	Carg18638
Synteny	Carg18638
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0009523 - photosystem II (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0019904 - protein domain specific binding (molecular function)
InterPro domains	IPR009518 - Photosystem II PsbX

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6586487.1 Protein Brevis radix-like 4, partial [Cucurbita argyrosperma subsp. sororia]

4.2e-51

100

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

XP_022938093.1 uncharacterized protein LOC111444282 [Cucurbita moschata]

9.4e-51

99.19

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRAS+KEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

XP_022946746.1 uncharacterized protein LOC111450721 [Cucurbita moschata]

2.7e-45

91.87

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA+AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

XP_022965530.1 uncharacterized protein LOC111465405 [Cucurbita maxima]

1.2e-50

99.19

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQV+ASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

XP_023537653.1 uncharacterized protein LOC111798628 [Cucurbita pepo subsp. pepo]

4.2e-51

100

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIL7 Uncharacterized protein

7.0e-44

87.8

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSA+SMAMPITNA QKR R  EAFAK LPLRPSNKP + S SSSAKFQVRASLKEKA+AGLAATALTASMVLPEVAEAAG+GV+PSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGA+IGV+NFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

A0A6J1FHW0 uncharacterized protein LOC111444282

4.6e-51

99.19

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRAS+KEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

A0A6J1G4H3 uncharacterized protein LOC111450721

1.3e-45

91.87

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA+AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

A0A6J1HNZ4 uncharacterized protein LOC111465405

5.9e-51

99.19

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQV+ASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVVTAILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

A0A6J1KCH8 uncharacterized protein LOC111493667

4.9e-45

91.06

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSAVSMAMPITNATQKR RST+AFAKALPLRPSNKP  AS +S AKFQVRASLKEKA+AGLAATALTASMVLPEVAEAAG GV+PSLKNFLLSIAAG
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        GVVV AILGAIIGVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G06520.1 photosystem II subunit X

2.2e-26

56.1

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Query:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG
        MASTSA+S+  P+ N T+     +  F K LPL+PS K + A+   + + QV+A   +KA+ G++A ALTASMV+PE+AEAAG+G++PSLKNFLLSIA+G
Subjt:  MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAG

Query:  GVVVTAILGAIIGVSNFDPVKRT
        G+V+T I+G ++GVSNFDPVKRT
Subjt:  GVVVTAILGAIIGVSNFDPVKRT

Sequences

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CDS sequence

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ATGGCTTCAACTTCCGCAGTTTCAATGGCTATGCCAATTACTAATGCGACCCAGAAGAGAGTGAGGAGCACCGAGGCCTTCGCTAAGGCATTGCCTTTGAGGCCTTCCAA
CAAGCCAATTGCTGCATCAAAATCCAGCAGCGCCAAGTTCCAAGTGCGGGCTTCTTTGAAGGAGAAGGCAATTGCTGGATTGGCTGCAACTGCACTGACGGCCTCCATGG
TGCTTCCTGAGGTGGCTGAAGCTGCAGGAGCTGGAGTTACCCCTTCTCTCAAGAATTTCTTGCTCAGTATTGCCGCCGGTGGAGTAGTTGTCACTGCTATCTTGGGTGCA
ATTATCGGTGTCTCCAATTTCGACCCCGTAAAGCGGACCTGA

mRNA sequence

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Protein sequence

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MASTSAVSMAMPITNATQKRVRSTEAFAKALPLRPSNKPIAASKSSSAKFQVRASLKEKAIAGLAATALTASMVLPEVAEAAGAGVTPSLKNFLLSIAAGGVVVTAILGA
IIGVSNFDPVKRT

Carg18638 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome