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Carg18643 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18643
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L18a-like protein
Genome locationCarg_Chr12:11943452..11945467
RNA-Seq ExpressionCarg18643
SyntenyCarg18643
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586492.1 hypothetical protein SDJN03_19225, partial [Cucurbita argyrosperma subsp. sororia]2.2e-6699.24Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESVSDKHPDLLRPSAR+CSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILLVIVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

KAG7021350.1 hypothetical protein SDJN02_18039 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-66100Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILLVIVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

XP_022937742.1 uncharacterized protein LOC111444050 [Cucurbita moschata]1.7e-6699.24Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVR
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILLVIVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

XP_022965444.1 uncharacterized protein LOC111465349 [Cucurbita maxima]5.5e-6596.97Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN R
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILL+IVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

XP_023538492.1 uncharacterized protein LOC111799252 [Cucurbita pepo subsp. pepo]1.5e-6598.48Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKD  DHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILLVIVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

TrEMBL top hitse value%identityAlignment
A0A1S3CAZ9 uncharacterized protein LOC1034986585.0e-5683.46Show/hide
Query:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN
        MDP  K++QTVQLV+SVSDKH DLLRPSARICSIFKGQ KD  DH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN

Query:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLL
         RRDPRERAGLAASAIAA ACS+ILL++VAVLL
Subjt:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLL

A0A5D3CGZ6 60S ribosomal protein L18a-15.0e-5683.46Show/hide
Query:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN
        MDP  K++QTVQLV+SVSDKH DLLRPSARICSIFKGQ KD  DH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGF FP+MWYYATILYFWN
Subjt:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN

Query:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLL
         RRDPRERAGLAASAIAA ACS+ILL++VAVLL
Subjt:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLL

A0A6J1FC32 uncharacterized protein LOC1114440508.3e-6799.24Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCG+GWFSFLLGFLFPIMWYYATILYFWNVR
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILLVIVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

A0A6J1G4J6 uncharacterized protein LOC1114506861.5e-5583.58Show/hide
Query:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN
        MDP  K++ TVQLV+SVSD+H DLLRPSARICSIFKGQ KD SDH ++KYTLL+DVED Q+GLYDKPLPCFGCGIGWFSFLLGFLFP+MWYYATILYFWN
Subjt:  MDP--KVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN

Query:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLLL
         RRDPRERAGLAAS+IAA ACSVILLV+VAV LL
Subjt:  VRRDPRERAGLAASAIAAFACSVILLVIVAVLLL

A0A6J1HNQ0 uncharacterized protein LOC1114653492.7e-6596.97Show/hide
Query:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR
        MDPKVEQTVQLVESV DKHPDLLRPSARICSIF+GQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN R
Subjt:  MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVR

Query:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL
        RDPRERAGLAASAIAAFACSVILL+IVAVLLL
Subjt:  RDPRERAGLAASAIAAFACSVILLVIVAVLLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G54217.1 Ribosomal protein L18ae family2.8e-2257.89Show/hide
Query:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL
        ++ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAA   SV L++ V VL+
Subjt:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL

AT1G54217.2 Ribosomal protein L18ae family7.3e-2358.95Show/hide
Query:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL
        D+ +  K KY L++ D ED ++G + KPLPCFG GIGWFSFLLGF+FP  WY AT LY  +   RDPRER+GLAASAIAA   SV L++ V VL+
Subjt:  DVSDHTKNKYTLLK-DVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVAVLL

AT4G26060.1 Ribosomal protein L18ae family1.3e-3561.98Show/hide
Query:  TVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRER
        + +LV+SV+DKH  L+RP A+  S      KD     K +YTL+KDV++++ G+YDKPLPCFGCGIGWFSFLLGF+FP +WYYAT+LYF N  R+DPRER
Subjt:  TVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRER

Query:  AGLAASAIAAFACSVILLVIV
        AGLAASAI A   S++LLVIV
Subjt:  AGLAASAIAAFACSVILLVIV

AT5G57060.1 FUNCTIONS IN: molecular_function unknown1.2e-3358.33Show/hide
Query:  QLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAG
        +LV+ ++D+H  L++ ++R  S      KD     K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAG
Subjt:  QLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAG

Query:  LAASAIAAFACSVILLVIVA
        LAASAI A   S++LLVI A
Subjt:  LAASAIAAFACSVILLVIVA

AT5G57060.2 BEST Arabidopsis thaliana protein match is: Ribosomal protein L18ae family (TAIR:AT4G26060.1)9.5e-3168.48Show/hide
Query:  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVA
        KD     K +YTL+KDV+D++ G YDKPLPCFGCGIGWFSFLLGF+FP +WYYA  LYF N  R+DPRERAGLAASAI A   S++LLVI A
Subjt:  KDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWN-VRRDPRERAGLAASAIAAFACSVILLVIVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCAAAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTCAAAGGCCAAGA
AAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGGCTGTGGCATTG
GATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTTTGGAACGTCCGCAGAGATCCCAGGGAACGAGCTGGTTTAGCT
GCGTCTGCCATTGCTGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAG
mRNA sequenceShow/hide mRNA sequence
AATTTTAGTCAAGCTAGGTTATTTTATTACCAATTCATCGGATGGCTTGTGGAAGATTGAAAAGCTCCATAGGCTAGTGTCTTCAATTGAGTAGTTTTCTTTTTAGTCAA
CATGAAAGTCTGATGAATTTGATAAAAGAAACTTGGATTATTTGGATTTTAAATACCAAACTAGGGGGAATTTTCATTCCAGATGCAATTCTTCTGATTGCTGCATCTTG
TCGGGTGTCATTTGATTATATTGTTCTAACTACTGAGTAGATTTTAATCTCTTGACACAGGTGTAGAAAGTGGATAGCGCAAACTTGAAGAGCTCATCCTTCCATAAACT
CCAGCTTCAACATGGATCCAAAAGTTGAGCAGACAGTGCAACTGGTGGAATCGGTCTCTGATAAGCATCCTGATCTTTTGAGGCCATCTGCCCGAATTTGTTCCATATTC
AAAGGCCAAGAAAAAGATGTGTCTGACCATACAAAGAACAAGTATACTCTTCTCAAAGATGTCGAGGATTTGCAAATAGGTCTATATGACAAGCCTCTTCCGTGTTTTGG
CTGTGGCATTGGATGGTTCTCTTTCCTTCTCGGGTTTTTGTTCCCAATAATGTGGTACTATGCCACAATTCTCTACTTTTGGAACGTCCGCAGAGATCCCAGGGAACGAG
CTGGTTTAGCTGCGTCTGCCATTGCTGCATTTGCATGTTCGGTCATCTTGTTAGTCATCGTAGCTGTTCTCCTATTATAGCCTCCCCTGTCTCTCGACTCGCACTGCATT
CTCTTTGCCCCTTCAACCTCAAAGAATTATAAATGAATAAAAACCACATGGAAATAACAATTTGGGCATTACAGTCCCAAACAGAACAGCTTCCGTGGATATGAAGATAA
AGATCGAGGGGCTCTGTTGCGGGACAATGGTGATTTCTTTTACTTTTCTTTACATCAAATGTAAATGTTTATAAATCATATTTACATATATTTGCCACCTCTTTCAAG
Protein sequenceShow/hide protein sequence
MDPKVEQTVQLVESVSDKHPDLLRPSARICSIFKGQEKDVSDHTKNKYTLLKDVEDLQIGLYDKPLPCFGCGIGWFSFLLGFLFPIMWYYATILYFWNVRRDPRERAGLA
ASAIAAFACSVILLVIVAVLLL