; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18644 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18644
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationCarg_Chr12:11946565..11949154
RNA-Seq ExpressionCarg18644
SyntenyCarg18644
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0006457 - protein folding (biological process)
GO:0005832 - chaperonin-containing T-complex (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0051082 - unfolded protein binding (molecular function)
InterPro domainsIPR000086 - NUDIX hydrolase domain
IPR015797 - NUDIX hydrolase-like domain superfamily
IPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586493.1 Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma subsp. sororia]3.1e-121100Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_022937740.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita moschata]3.4e-12098.62Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRV+RMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYP+LSNNVKGAKECTKLFLVKLPE+RKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_022965443.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita maxima]3.7e-11998.16Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRV+RMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIF+LPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANG+PDASDWEVGDCLGTWWRPDFETLL PYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_023536755.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita pepo subsp. pepo]5.8e-12098.16Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESA ADQIRAIDIYPLSNYYFGSKEPL+FKDKTLADRV+RMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYP+LSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_038889512.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida]1.6e-10686.64Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGR+HAM+DDE++AADQ  +I IYPLSNYYF SKEPL+FKD+T ADR++RMKSNYAAYGLRTSVEAVLLVELFKHPH+LL QIRNSIF LPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESD+DGL RKLSRKLSANGA DASDWEVG+CLG WWRPDFETLL+PYLS+ VKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HENHK YGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSF+IIET
Subjt:  SGIPQLLSKFSFNIIET

TrEMBL top hitse value%identityAlignment
A0A0A0LIM0 Pre-mRNA cleavage factor Im 25 kDa subunit6.3e-10482.95Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGR+HA++DD++++A Q+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAA+GLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGR+RP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGL RKL++KLSANGA DAS WEV +CLG WWRPDFETLL+PYLS NVKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HENHK YGP+I
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNII T
Subjt:  SGIPQLLSKFSFNIIET

A0A1S3C9Z9 Pre-mRNA cleavage factor Im 25 kDa subunit6.9e-10382.65Show/hide
Query:  MGDDGRMHAM--EDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRL
        MGDDGR+HA+  +DD++++A Q+  IDIYPLSNYYFGSKEPL+FKD+TL+DR++RMKSNYAAYGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRL
Subjt:  MGDDGRMHAM--EDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRL

Query:  RPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGP
        RPNESDIDGL RKLS+KL ANGA DASDWEV +CLG WWRPDFETLL+PYLS NVKGAKEC KLFLVKLPES+KF+VPKNLKLIAVPLCQ+HENHK YGP
Subjt:  RPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGP

Query:  VISGIPQLLSKFSFNIIET
        VISGIPQLLSKFSFNII T
Subjt:  VISGIPQLLSKFSFNIIET

A0A6J1DN47 Pre-mRNA cleavage factor Im 25 kDa subunit5.1e-10687.5Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGD+G +HAMEDDE+A A+Q RA+ IYPL NYYFGSKEPL+FK++TLADR+ RMKSNYAA GLRT VEAVLLVELFKHPH+LLLQIRNSIF LPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANG  DASDWEVG+CLG WWRPDFETLLYPYLS+NVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHEN K YGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIE
        SG+PQLLSKFSFNIIE
Subjt:  SGIPQLLSKFSFNIIE

A0A6J1FHN4 Pre-mRNA cleavage factor Im 25 kDa subunit1.6e-12098.62Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRV+RMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYP+LSNNVKGAKECTKLFLVKLPE+RKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

A0A6J1HNY2 Pre-mRNA cleavage factor Im 25 kDa subunit1.8e-11998.16Show/hide
Query:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP
        MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRV+RMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIF+LPGGRLRP
Subjt:  MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRP

Query:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
        NESDIDGLKRKLSRKLSANG+PDASDWEVGDCLGTWWRPDFETLL PYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI
Subjt:  NESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 56.6e-5048.69Show/hide
Query:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA
        R I++YPL+NY FG+KEPL  KD ++A R  RM+  +   G+R +VE VL+V   + PHVLLLQ+  + F LPGG L P E +++GLKR ++  L     
Subjt:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA

Query:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF
            DW + DC+G WWRP+FE   YPY+  ++   KE  KLFLV+L E   F VPKN KL+A PL +L++N   YGP+IS +PQLLS+F+F
Subjt:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 56.6e-5048.69Show/hide
Query:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA
        R I++YPL+NY FG+KEPL  KD ++A R  RM+  +   G+R +VE VL+V   + PHVLLLQ+  + F LPGG L P E +++GLKR ++  L     
Subjt:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA

Query:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF
            DW + DC+G WWRP+FE   YPY+  ++   KE  KLFLV+L E   F VPKN KL+A PL +L++N   YGP+IS +PQLLS+F+F
Subjt:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF

Q7T3C6 Cleavage and polyadenylation specificity factor subunit 55.0e-5048.69Show/hide
Query:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA
        R I++YPL+NY FG+KEPL  KD ++A R  RM+  +   G+R +VE VL+V   + PHVLLLQ+  + F LPGG L P E +++GLKR ++  L     
Subjt:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA

Query:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF
            DW + DC+G WWRP+FE   YPY+  ++   KE  KLFLV+L E   F VPKN KL+A PL +L++N   YGP+IS +PQLLS+F+F
Subjt:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 25.2e-6356.12Show/hide
Query:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA
        + ++ YPLSNY FG+KEP + KD ++ADR+ RMK NY   G+RTSVE +LLV+   HPH+LLLQI N+   LPGGRL+P E++ DGLKRKL+ KL  N A
Subjt:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA

Query:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET
            DW VG+C+ TWWRP+FET++YPY   ++   KEC +L++V L E   F VPKNLKL+AVPL +L++N + YGPVIS IPQ LS+F FN+I +
Subjt:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET

Q94AF0 Pre-mRNA cleavage factor Im 25 kDa subunit 11.2e-8065.16Show/hide
Query:  MGDDGR---MHAMEDDESAAADQIR--AIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPG
        MG++ R   M  + D+ +   D +    +D+YPLS+YYFGSKE L  KD+ ++DRV+R+KSNYAA+GLRT VEAVLLVELFKHPHVLLLQ RNSIF LPG
Subjt:  MGDDGR---MHAMEDDESAAADQIR--AIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPG

Query:  GRLRPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKM
        GRLRP ESDI+GLKRKL+ KLS N     S +EVG+C+G WWRP+FETL+YP+L  N+K  KECTKLFLV+LP  ++F+VPKN KL+AVPLCQLHEN K 
Subjt:  GRLRPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKM

Query:  YGPVISGIPQLLSKFSFNIIE
        YGP++S IP+LLSKFSFN++E
Subjt:  YGPVISGIPQLLSKFSFNIIE

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit3.7e-6456.12Show/hide
Query:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA
        + ++ YPLSNY FG+KEP + KD ++ADR+ RMK NY   G+RTSVE +LLV+   HPH+LLLQI N+   LPGGRL+P E++ DGLKRKL+ KL  N A
Subjt:  RAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKRKLSRKLSANGA

Query:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET
            DW VG+C+ TWWRP+FET++YPY   ++   KEC +L++V L E   F VPKNLKL+AVPL +L++N + YGPVIS IPQ LS+F FN+I +
Subjt:  PDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET

AT4G29820.1 homolog of CFIM-258.7e-8265.16Show/hide
Query:  MGDDGR---MHAMEDDESAAADQIR--AIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPG
        MG++ R   M  + D+ +   D +    +D+YPLS+YYFGSKE L  KD+ ++DRV+R+KSNYAA+GLRT VEAVLLVELFKHPHVLLLQ RNSIF LPG
Subjt:  MGDDGR---MHAMEDDESAAADQIR--AIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPG

Query:  GRLRPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKM
        GRLRP ESDI+GLKRKL+ KLS N     S +EVG+C+G WWRP+FETL+YP+L  N+K  KECTKLFLV+LP  ++F+VPKN KL+AVPLCQLHEN K 
Subjt:  GRLRPNESDIDGLKRKLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKM

Query:  YGPVISGIPQLLSKFSFNIIE
        YGP++S IP+LLSKFSFN++E
Subjt:  YGPVISGIPQLLSKFSFNIIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACGACGGGCGTATGCATGCTATGGAGGATGATGAATCTGCCGCTGCCGACCAAATCCGCGCCATCGATATTTACCCTCTCAGTAACTACTACTTCGGATCCAA
AGAGCCTCTTATTTTCAAGGACAAGACCTTGGCTGATCGCGTTGTCAGGATGAAATCCAATTATGCTGCTTATGGATTGAGGACTTCTGTCGAAGCAGTTTTGCTGGTTG
AGCTATTCAAGCATCCTCATGTGTTGCTGTTGCAAATACGAAATTCAATTTTCAATCTTCCCGGTGGTCGCCTAAGGCCCAATGAATCTGATATTGATGGCTTGAAGCGA
AAGTTATCAAGGAAGCTTTCTGCCAATGGAGCCCCTGATGCATCTGATTGGGAGGTGGGCGATTGCCTTGGTACGTGGTGGAGGCCTGACTTCGAAACCTTGCTCTATCC
ATATTTGTCCAACAATGTAAAAGGAGCCAAGGAGTGCACTAAACTTTTCCTGGTCAAATTGCCGGAGAGTCGAAAATTCATTGTGCCAAAGAACCTTAAGTTGATTGCAG
TTCCTTTATGCCAACTTCACGAAAACCATAAGATGTACGGGCCAGTTATATCGGGTATTCCGCAGTTACTTTCCAAGTTTTCCTTCAACATCATCGAAACTTAA
mRNA sequenceShow/hide mRNA sequence
TCCTACTGGTCGTCTTGTCTGTCTCCTTTTAGCCTCATTAAGCACTGAGTGACGCACTCCACTTTTCGCTTCGTGTCCATTCTCTGCAACCAACACGCCATCTTCATCCA
CTTTCCTCCTTTTCTTCTGCTACTTCATCTCTCTTGATTTTCTACTGTTTTCCTCAATCGGTCATGGGAGACGACGGGCGTATGCATGCTATGGAGGATGATGAATCTGC
CGCTGCCGACCAAATCCGCGCCATCGATATTTACCCTCTCAGTAACTACTACTTCGGATCCAAAGAGCCTCTTATTTTCAAGGACAAGACCTTGGCTGATCGCGTTGTCA
GGATGAAATCCAATTATGCTGCTTATGGATTGAGGACTTCTGTCGAAGCAGTTTTGCTGGTTGAGCTATTCAAGCATCCTCATGTGTTGCTGTTGCAAATACGAAATTCA
ATTTTCAATCTTCCCGGTGGTCGCCTAAGGCCCAATGAATCTGATATTGATGGCTTGAAGCGAAAGTTATCAAGGAAGCTTTCTGCCAATGGAGCCCCTGATGCATCTGA
TTGGGAGGTGGGCGATTGCCTTGGTACGTGGTGGAGGCCTGACTTCGAAACCTTGCTCTATCCATATTTGTCCAACAATGTAAAAGGAGCCAAGGAGTGCACTAAACTTT
TCCTGGTCAAATTGCCGGAGAGTCGAAAATTCATTGTGCCAAAGAACCTTAAGTTGATTGCAGTTCCTTTATGCCAACTTCACGAAAACCATAAGATGTACGGGCCAGTT
ATATCGGGTATTCCGCAGTTACTTTCCAAGTTTTCCTTCAACATCATCGAAACTTAAGAGTCATCTCATTGATAATAAAAAAGATGACAAACTATCATCGGTCGGTATTA
GCAGACCAGTGAAAAGAATATTTATTAGTGCATTATAGAGCTGTCAGCTAACTTTGTATGAACGTTGACAGACCCTTGTATAAAACATGCACACAAACAATGGTGATGAT
TTTGGAAGTATAAAGATATTGTATAGTTATATAGGTTCACATTGTTACTTTAAAACTTATGTTTGAATGAGTGCTAAAACTATATGATTGTGTAAATTTCTGTCAGTTCT
GTGACTTTCTTAGCTAATGATCTCAATTTTCATGTGCTACGGGCCAATCTATTTCATTCTCTCATTCAAGGATGCAGAGAAATGGCGAGGTATGTAATCTGCTAAATTTT
ATGCTGTGTCAAATGTGTCAAATGTGTCAAATATATATGTGATCCTTATCCAAAGAATACTTGTGGTCTTGAAAAGCTTTGTTATCTGTGGCTCTCGTTGCATGTTTCTT
CTAATTGGATATTCTTGATGTGTGGTTATTCTATTGGGGGGTTGGGTTCAAAAGGGGTGTATTATATATCGTAG
Protein sequenceShow/hide protein sequence
MGDDGRMHAMEDDESAAADQIRAIDIYPLSNYYFGSKEPLIFKDKTLADRVVRMKSNYAAYGLRTSVEAVLLVELFKHPHVLLLQIRNSIFNLPGGRLRPNESDIDGLKR
KLSRKLSANGAPDASDWEVGDCLGTWWRPDFETLLYPYLSNNVKGAKECTKLFLVKLPESRKFIVPKNLKLIAVPLCQLHENHKMYGPVISGIPQLLSKFSFNIIET