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Carg18647 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18647
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-box protein 1a-like
Genome locationCarg_Chr12:11962315..11964348
RNA-Seq ExpressionCarg18647
SyntenyCarg18647
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016310 - phosphorylation (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0031461 - cullin-RING ubiquitin ligase complex (cellular component)
GO:0005524 - ATP binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016301 - kinase activity (molecular function)
GO:0016462 - pyrophosphatase activity (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0097602 - cullin family protein binding (molecular function)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR024766 - Zinc finger, RING-H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004306863.1 PREDICTED: RING-box protein 1a-like [Fragaria vesca subsp. vesca]8.4e-6296.49Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV M+PVGE SSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

XP_007218617.1 RING-box protein 1a [Prunus persica]4.9e-6297.37Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

XP_015889019.1 RING-box protein 1a [Ziziphus jujuba]2.2e-6298.25Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

XP_022937741.1 RING-box protein 1a-like [Cucurbita moschata]2.0e-63100Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

XP_027926839.1 RING-box protein 1a isoform X2 [Vigna unguiculata]1.4e-6196.49Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDVTMVP GE SSSAGPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

TrEMBL top hitse value%identityAlignment
A0A6J1DPM4 RING-box protein 1a-like1.1e-6298.25Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

A0A6J1FB79 RING-box protein 1a-like9.7e-64100Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

A0A6J1HSM1 RING-box protein 1a-like isoform X19.7e-64100Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

A0A6P4A6G4 RING-box protein 1a1.1e-6298.25Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

M5X2V0 RING-type domain-containing protein2.4e-6297.37Show/hide
Query:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
        +DSDV MVPVGEASSSAGPSSTK+PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC
Subjt:  MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVC

Query:  PLDNSEWEFQKYGH
        PLDNSEWEFQKYGH
Subjt:  PLDNSEWEFQKYGH

SwissProt top hitse value%identityAlignment
P62877 E3 ubiquitin-protein ligase RBX13.7e-5283.33Show/hide
Query:  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

P62878 E3 ubiquitin-protein ligase RBX13.7e-5283.33Show/hide
Query:  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE
        M    +  + +G +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN E
Subjt:  MVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSE

Query:  WEFQKYGH
        WEFQKYGH
Subjt:  WEFQKYGH

Q940X7 RING-box protein 1a2.8e-6092.17Show/hide
Query:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
        +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
Subjt:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV

Query:  CPLDNSEWEFQKYGH
        CPLDNSEWEFQKYGH
Subjt:  CPLDNSEWEFQKYGH

Q9M2B0 RING-box protein 1b2.8e-5283.48Show/hide
Query:  MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
        ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
Subjt:  MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV

Query:  CPLDNSEWEFQKYGH
        CPLD  EWEFQKYGH
Subjt:  CPLDNSEWEFQKYGH

Q9W5E1 RING-box protein 1A6.3e-5291.84Show/hide
Query:  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        PSS+ K   KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN EW+FQKYGH
Subjt:  PSSTKK--PKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

Arabidopsis top hitse value%identityAlignment
AT3G05870.1 anaphase-promoting complex/cyclosome 114.4e-1639.56Show/hide
Query:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK
        K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNHAFH HCI +W+  +T Q  CP+   EW+F++
Subjt:  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL--KTRQV-CPLDNSEWEFQK

AT3G42830.1 RING/U-box superfamily protein2.0e-5383.48Show/hide
Query:  MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
        ++SDV M   GE+SS + P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIMDLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
Subjt:  MDSDVTMVPVGEASSSAGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV

Query:  CPLDNSEWEFQKYGH
        CPLD  EWEFQKYGH
Subjt:  CPLDNSEWEFQKYGH

AT5G20570.1 RING-box 12.0e-6192.17Show/hide
Query:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
        +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV
Subjt:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV

Query:  CPLDNSEWEFQKYGH
        CPLDNSEWEFQKYGH
Subjt:  CPLDNSEWEFQKYGH

AT5G20570.2 RING-box 12.3e-5776.26Show/hide
Query:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW---------------------
        +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW                     
Subjt:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAW---------------------

Query:  ---GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
           GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  ---GVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH

AT5G20570.3 RING-box 13.0e-5778.95Show/hide
Query:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC
        +DSDVTM+P GEASSS A  SS KK KRFEIKKW+AVALWAW                   IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC
Subjt:  MDSDVTMVPVGEASSS-AGPSSTKKPKRFEIKKWNAVALWAWD------------------IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVC

Query:  NHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
        NHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH
Subjt:  NHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCAGTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGC
TCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGAAATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAAT
GTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAG
AAGTACGGTCACTAG
mRNA sequenceShow/hide mRNA sequence
ACATAATGATGTAATTATAATATTACACTATAAAACAAACTTAAATGGTAATAACAAATTTCATTGAAAATAAAAAATTCAAGACGCAGCTACAGCTACAGGAAATCGGT
CCGCCCGTGTCAAGGAGACGGATTAAGAAGCATCTTTCTTGCAACTTTCCTTTTTGTGCCAACCATGGACTCCGACGTGACGATGGTTCCGGTCGGCGAGGCTTCGAGCA
GTGCCGGTCCTTCGTCCACCAAGAAACCCAAGCGTTTTGAGATCAAAAAGTGGAACGCCGTCGCTCTATGGGCATGGGATATCGTTGTCGATAACTGTGCGATCTGCAGA
AATCATATCATGGATCTTTGCATCGAGTGCCAAGCAAACCAGGCAAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTG
TATCAGTAGATGGTTGAAGACGCGTCAAGTTTGCCCGTTGGATAATAGCGAGTGGGAATTTCAGAAGTACGGTCACTAGAACTTTGCTGCTGAGAATATGGATCCTTAAA
TTCTCATGGATCTCTAATGTTGTCGACGATGAACTCTCTCCATACATGGTTTCTGAAATTTGCGATCTGAAGATGCATTTTGTTGAGCAACTACAATTGTCCAGAGAATT
ATGTGATTTTATTTGGGAGTTGTTTGTAGAAATAGGCTAGCACTCAAACGTTAGTTCTTGTTTTACCGTTTACCATTTCTGTACTTGTATTTATGTTAACATCTCACTTG
GTTCATCTGGAAAATTTGGATCTTATTGTTGCCTATTTGCTCTTCGGTTCTTGTTTGTCTATCGGATATTCTTCTTCCCATAATATAATCGTGTTCTTCACCGAATGAAT
TCTTCTAAAGTGATCTTACTTTAG
Protein sequenceShow/hide protein sequence
MDSDVTMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQ
KYGH