CuGenDBv2

Gene ID	Carg18655
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Auxin response factor
Genome location	Carg_Chr12:12002386..12002736
RNA-Seq Expression	Carg18655
Synteny	Carg18655
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009734 - auxin-activated signaling pathway (biological process) GO:0005634 - nucleus (cellular component) GO:0003677 - DNA binding (molecular function)
InterPro domains	IPR015300 - DNA-binding pseudobarrel domain superfamily IPR044835 - Auxin response factor

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7021362.1 Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.2e-43

100

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Query:  MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL
        MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL
Subjt:  MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL

XP_022937522.1 auxin response factor 19-like isoform X1 [Cucurbita moschata]

2.4e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

XP_022937523.1 auxin response factor 19-like isoform X2 [Cucurbita moschata]

2.4e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

XP_022965393.1 auxin response factor 19-like isoform X1 [Cucurbita maxima]

2.4e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

XP_023538355.1 auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo]

2.4e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1FBF6 Auxin response factor

1.2e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

A0A6J1FG93 Auxin response factor

1.2e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

A0A6J1HNK0 Auxin response factor

1.2e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

A0A6J1HNS5 Auxin response factor

1.2e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

A0A6J1HQV9 Auxin response factor

1.2e-32

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Query:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V+  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

SwissProt top hits

e value

%identity

Alignment

A2YAA5 Auxin response factor 16

3.6e-31

87.32

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Query:  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        AD ETDEVY QMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

A3B9A0 Auxin response factor 16

1.3e-31

88.73

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Query:  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        AD ETDEVYAQMTLQPVNKY+++A+LAS++GLKQN+QPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  ADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

P93022 Auxin response factor 7

1.6e-31

81.71

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP L
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

Q6Z2W3 Auxin response factor 5

1.1e-27

75.61

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     ADP+TDEVYAQMTLQPVN Y KEAL  S++ LKQ R   EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

Q8RYC8 Auxin response factor 19

4.3e-32

82.93

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

Arabidopsis top hits

e value

%identity

Alignment

AT1G19220.1 auxin response factor 19

3.1e-33

82.93

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     AD ETDEVYAQMTLQPVNKY++EALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

AT1G30330.1 auxin response factor 6

1.3e-23

69.74

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Query:  VLNQADPETDEVYAQMTLQPVNKYE-KEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        V   AD ETDEVYAQMTLQP+N  E K+  L +++G+  +RQP  +FCKTLTASDTSTHGGFSVPRRAAEK+FPPL
Subjt:  VLNQADPETDEVYAQMTLQPVNKYE-KEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

AT5G20730.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

1.2e-32

81.71

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP L
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

AT5G20730.2 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

1.2e-32

81.71

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP L
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

AT5G20730.3 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

1.2e-32

81.71

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Query:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL
        L C+L+     ADPETDEVYAQMTLQPVNKY+++ALLASD+GLK NRQP EFFCKTLTASDTSTHGGFSVPRRAAEKIFP L
Subjt:  LFCVLN----QADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPL

Sequences

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CDS sequence

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ATGAGATGGTTATTTTGTGTTCTGAACCAGGCTGATCCTGAAACTGATGAAGTGTATGCACAAATGACCCTTCAACCAGTGAATAAATATGAAAAAGAAGCTTTATTGGC
ATCTGATATTGGCCTCAAGCAAAACAGGCAGCCTGCTGAGTTCTTCTGCAAAACTCTAACAGCTAGTGACACTAGCACTCACGGTGGATTTTCTGTGCCTCGTCGTGCAG
CTGAGAAGATTTTTCCCCCATTAGTGCGCATCACATCTCGTATTCTTTAA

mRNA sequence

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Protein sequence

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MRWLFCVLNQADPETDEVYAQMTLQPVNKYEKEALLASDIGLKQNRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLVRITSRIL

Carg18655 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome