; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18656 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18656
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAuxin response factor
Genome locationCarg_Chr12:12002823..12006428
RNA-Seq ExpressionCarg18656
SyntenyCarg18656
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0009734 - auxin-activated signaling pathway (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR044835 - Auxin response factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021363.1 Auxin response factor 19, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-131100Show/hide
Query:  MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRWNGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRK
        MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRWNGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRK
Subjt:  MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRWNGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRK

Query:  WFVEHSIVRGGPAVMARAESRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSE
        WFVEHSIVRGGPAVMARAESRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSE
Subjt:  WFVEHSIVRGGPAVMARAESRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSE

Query:  QVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV
        QVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV
Subjt:  QVAASMNKETDFIPNYPNLPSKLVCMLHNVILHV

TYK10829.1 auxin response factor 19 isoform X2 [Cucumis melo var. makuwa]5.8e-4988.89Show/hide
Query:  HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVC
        HG VLA TE+VI FPLDL V+SY+MKAP NGF+ NSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKL+C
Subjt:  HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVC

Query:  MLHNVILH
        MLHNV LH
Subjt:  MLHNVILH

XP_022937523.1 auxin response factor 19-like isoform X2 [Cucurbita moschata]3.1e-42100Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

XP_022965394.1 auxin response factor 19-like isoform X2 [Cucurbita maxima]3.1e-42100Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

XP_023538355.1 auxin response factor 19-like isoform X2 [Cucurbita pepo subsp. pepo]3.1e-42100Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

TrEMBL top hitse value%identityAlignment
A0A5D3CKR6 Auxin response factor2.8e-4988.89Show/hide
Query:  HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVC
        HG VLA TE+VI FPLDL V+SY+MKAP NGF+ NSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKL+C
Subjt:  HGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVC

Query:  MLHNVILH
        MLHNV LH
Subjt:  MLHNVILH

A0A6J1FG93 Auxin response factor1.5e-42100Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

A0A6J1HNK0 Auxin response factor4.8e-4197.67Show/hide
Query:  MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGE  GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

A0A6J1HNS5 Auxin response factor4.8e-4197.67Show/hide
Query:  MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGE  GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGE--GERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

A0A6J1HQV9 Auxin response factor1.5e-42100Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

SwissProt top hitse value%identityAlignment
A2YAA5 Auxin response factor 161.1e-2977.22Show/hide
Query:  NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        +G  P  GEGE+K INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM+KE D IP YP+LPSKL+C L ++ LH
Subjt:  NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

A3B9A0 Auxin response factor 161.1e-2977.22Show/hide
Query:  NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        +G  P  GEGE+K INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM+KE D IP YP+LPSKL+C L ++ LH
Subjt:  NGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

P93022 Auxin response factor 71.3e-3582.35Show/hide
Query:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K+TDFIP+YPNLPSKL+CMLHNV L+
Subjt:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

Q6Z2W3 Auxin response factor 51.3e-2781.08Show/hide
Query:  EGERK--NINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETD-FIPNYPNLPSKLVCMLHNVILH
        EGERK   INSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+ D  +P+YPNLPSKL+C+LH V LH
Subjt:  EGERK--NINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETD-FIPNYPNLPSKLVCMLHNVILH

Q8RYC8 Auxin response factor 192.8e-3884.52Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP NGF+P+S EGE+K INS+LWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+TDFIPNYPNLPSKL+C+LH+V LH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

Arabidopsis top hitse value%identityAlignment
AT1G19220.1 auxin response factor 192.0e-3984.52Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP NGF+P+S EGE+K INS+LWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASM K+TDFIPNYPNLPSKL+C+LH+V LH
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

AT1G30330.1 auxin response factor 63.2e-2969.41Show/hide
Query:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETD-FIPNYPNLPSKLVCMLHNVILH
        M+    GF P   EGE++ +NSELWHACAGPLVSLPPVGS VVYFPQGHSEQVAAS NKE D  IPNYP+L  +L+C LHNV +H
Subjt:  MKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETD-FIPNYPNLPSKLVCMLHNVILH

AT5G20730.1 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related9.2e-3782.35Show/hide
Query:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K+TDFIP+YPNLPSKL+CMLHNV L+
Subjt:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

AT5G20730.2 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related9.2e-3782.35Show/hide
Query:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K+TDFIP+YPNLPSKL+CMLHNV L+
Subjt:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH

AT5G20730.3 Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related9.2e-3782.35Show/hide
Query:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH
        MKAP  NG  PN  EGER+NINSELWHACAGPL+SLPP GSLVVYFPQGHSEQVAASM K+TDFIP+YPNLPSKL+CMLHNV L+
Subjt:  MKAP-PNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLPSKLVCMLHNVILH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGCGGACAAAAGTCCAGAGAAGAGTGGAGAAACAAGAGAGGATGCAGCCATGGAGGGGAGGGTTGAATCCAAAACCTGGTATATGCGGATAAGAAGAGCAAGTAG
AAAAGGGGTTCACAGGAGAAAGAGCTTGAAAAGGAAGGTGATCTGGAGCGTGCAGATTCAGAGAAGGTGGAATGGATTAGAAGAACAGTCGAAAAAGCGAGTGATGGAAG
ATCAAAAGGAGGATGTGGGGAGGACGTCATCTTTAAGCGAGGGCATGATCAAGGGTCAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCATAGTGCGGGGT
GGCCCAGCAGTCATGGCGAGGGCGGAGAGCAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATC
CTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGT
TACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAACAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCT
TCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGTATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGCGGACAAAAGTCCAGAGAAGAGTGGAGAAACAAGAGAGGATGCAGCCATGGAGGGGAGGGTTGAATCCAAAACCTGGTATATGCGGATAAGAAGAGCAAGTAG
AAAAGGGGTTCACAGGAGAAAGAGCTTGAAAAGGAAGGTGATCTGGAGCGTGCAGATTCAGAGAAGGTGGAATGGATTAGAAGAACAGTCGAAAAAGCGAGTGATGGAAG
ATCAAAAGGAGGATGTGGGGAGGACGTCATCTTTAAGCGAGGGCATGATCAAGGGTCAGATTCGTGACGAAAACAGAAAATGGTTTGTTGAACATTCCATAGTGCGGGGT
GGCCCAGCAGTCATGGCGAGGGCGGAGAGCAGGCGCCGGGACTGGCATGGGTGTGTTCTTGCCTTTACGGAGCTAGTGATCAGATTTCCTTTGGATTTGTGGGTTATATC
CTACAGTATGAAAGCTCCCCCAAATGGGTTTGTCCCCAATTCTGGAGAAGGTGAAAGGAAGAATATTAATTCTGAGTTATGGCATGCTTGTGCTGGACCTCTTGTTTCGT
TACCGCCAGTTGGAAGTCTTGTGGTTTACTTCCCTCAAGGCCACAGTGAACAAGTTGCAGCATCCATGAACAAGGAGACTGATTTCATTCCAAACTACCCTAACCTTCCT
TCAAAGTTGGTGTGCATGCTCCATAATGTCATATTACACGTATGA
Protein sequenceShow/hide protein sequence
MQADKSPEKSGETREDAAMEGRVESKTWYMRIRRASRKGVHRRKSLKRKVIWSVQIQRRWNGLEEQSKKRVMEDQKEDVGRTSSLSEGMIKGQIRDENRKWFVEHSIVRG
GPAVMARAESRRRDWHGCVLAFTELVIRFPLDLWVISYSMKAPPNGFVPNSGEGERKNINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMNKETDFIPNYPNLP
SKLVCMLHNVILHV