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Carg18677 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18677
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionE3 ubiquitin ligase BIG BROTHER isoform X1
Genome locationCarg_Chr17:7480195..7480851
RNA-Seq ExpressionCarg18677
SyntenyCarg18677
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0046621 - negative regulation of organ growth (biological process)
GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058634.1 E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucumis melo var. makuwa]6.9e-1352.27Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPD---W----YFLCMILRY--------------ELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   W     F C  L+               ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPD---W----YFLCMILRY--------------ELLDLGESV

KAG7014240.1 hypothetical protein SDJN02_24415, partial [Cucurbita argyrosperma subsp. argyrosperma]7.8e-57100Show/hide
Query:  MAAHNLIRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLCMILRYELLDLGESVEKVGVFSKNKLICFRLHGTSYRACS
        MAAHNLIRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLCMILRYELLDLGESVEKVGVFSKNKLICFRLHGTSYRACS
Subjt:  MAAHNLIRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLCMILRYELLDLGESVEKVGVFSKNKLICFRLHGTSYRACS

Query:  REKSRRNDT
        REKSRRNDT
Subjt:  REKSRRNDT

KAG7025656.1 E3 ubiquitin ligase BIG BROTHER, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-1258.9Show/hide
Query:  IRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC----MILRYELLDLGESV
        + E+ HLPPS+D+ ERE EYP STV++D+PEPTYAP VE+DVVDTHS+P+   +          ELLDLGESV
Subjt:  IRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC----MILRYELLDLGESV

TYK10442.1 E3 ubiquitin ligase BIG BROTHER isoform X1 [Cucumis melo var. makuwa]2.2e-1150Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

XP_038899262.1 E3 ubiquitin-protein ligase BIG BROTHER [Benincasa hispida]2.2e-1150Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S  ++++PEPTYAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

TrEMBL top hitse value%identityAlignment
A0A0A0K8C4 RING-type domain-containing protein2.4e-1148.84Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S +++++PEP+YAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

A0A1S3CED1 E3 ubiquitin ligase BIG BROTHER isoform X11.1e-1150Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

A0A1S3CES7 E3 ubiquitin ligase BIG BROTHER isoform X21.1e-1150Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

A0A5A7UTY6 E3 ubiquitin ligase BIG BROTHER isoform X13.3e-1352.27Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPD---W----YFLCMILRY--------------ELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   W     F C  L+               ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPD---W----YFLCMILRY--------------ELLDLGESV

A0A5D3CGQ8 E3 ubiquitin ligase BIG BROTHER isoform X11.1e-1150Show/hide
Query:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV
        E+HHLPPSMD+ ERE EYP+S V++++PEP+YAP VE+DVVD HSIP+   L                     +   ELLDLGESV
Subjt:  ETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLC-------------------MILRYELLDLGESV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGCCCACAATCTAATTCGAGAAACTCACCATTTACCACCTTCAATGGATATCTGTGAAAGGGAATCCGAGTATCCTTCTTCGACGGTTGATATCGATCTTCCCGA
ACCGACATATGCTCCGTTCGTTGAGAAGGATGTTGTTGATACTCATTCTATACCAGACTGGTACTTCTTGTGTATGATTTTACGATATGAACTGTTGGACTTGGGTGAAT
CAGTTGAAAAAGTCGGGGTCTTTTCGAAGAACAAATTAATTTGCTTCCGACTGCACGGTACAAGTTATCGAGCTTGTTCTCGAGAAAAAAGTCGGAGGAACGATACT
mRNA sequenceShow/hide mRNA sequence
ATGGCGGCCCACAATCTAATTCGAGAAACTCACCATTTACCACCTTCAATGGATATCTGTGAAAGGGAATCCGAGTATCCTTCTTCGACGGTTGATATCGATCTTCCCGA
ACCGACATATGCTCCGTTCGTTGAGAAGGATGTTGTTGATACTCATTCTATACCAGACTGGTACTTCTTGTGTATGATTTTACGATATGAACTGTTGGACTTGGGTGAAT
CAGTTGAAAAAGTCGGGGTCTTTTCGAAGAACAAATTAATTTGCTTCCGACTGCACGGTACAAGTTATCGAGCTTGTTCTCGAGAAAAAAGTCGGAGGAACGATACT
Protein sequenceShow/hide protein sequence
MAAHNLIRETHHLPPSMDICERESEYPSSTVDIDLPEPTYAPFVEKDVVDTHSIPDWYFLCMILRYELLDLGESVEKVGVFSKNKLICFRLHGTSYRACSREKSRRNDT