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Carg18681 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18681
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type E3 ubiquitin transferase
Genome locationCarg_Chr17:7462254..7463480
RNA-Seq ExpressionCarg18681
SyntenyCarg18681
Gene Ontology termsGO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7014236.1 hypothetical protein SDJN02_24411, partial [Cucurbita argyrosperma subsp. argyrosperma]4.9e-53100Show/hide
Query:  MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLKLFSGCRNFSVTCISGEESFHQKKINGDVDVDVDVVCGLIEKQEKRK
        MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLKLFSGCRNFSVTCISGEESFHQKKINGDVDVDVDVVCGLIEKQEKRK
Subjt:  MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLKLFSGCRNFSVTCISGEESFHQKKINGDVDVDVDVVCGLIEKQEKRK

Query:  LQG
        LQG
Subjt:  LQG

XP_022954068.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita moschata]3.7e-08100Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

XP_022991900.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita maxima]3.7e-08100Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

XP_023547952.1 E3 ubiquitin-protein ligase makorin-like isoform X2 [Cucurbita pepo subsp. pepo]3.7e-08100Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

XP_028952684.1 putative RING-type E3 ubiquitin transferase C3H69 isoform X2 [Malus domestica]4.1e-0754.55Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLL-VVYFCSTLPF-INLKLFSGCRNFSVTC
        HA+ DGRLEE+ LRHIGN+DG TVIA NIRF  V L++  +YF    PF     +FSGC+ F + C
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLL-VVYFCSTLPF-INLKLFSGCRNFSVTC

TrEMBL top hitse value%identityAlignment
A0A4S4DC59 RING-type E3 ubiquitin transferase4.9e-0636.27Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLK-LFSGCRNFSVTCIS-GEESFHQKKINGDVDVDVDVVCGLIEKQEKRK
        HA+ DGRLEE+ LRH+G +DG TVIAKNIRFC +  +L  +      F+ +  LF     F     + G       K+N   ++   V  G+++   +RK
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLK-LFSGCRNFSVTCIS-GEESFHQKKINGDVDVDVDVVCGLIEKQEKRK

Query:  LQ
         Q
Subjt:  LQ

A0A6J1GRT6 E3 ubiquitin-protein ligase makorin-like isoform X21.8e-08100Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

A0A6J1JU79 E3 ubiquitin-protein ligase makorin-like isoform X21.8e-08100Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

A0A6J1KUX3 RING-type E3 ubiquitin transferase4.9e-0686.67Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAH DGRLEE+ LRHIGNQDGLT+IAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

A0A6J1KWK8 RING-type E3 ubiquitin transferase4.9e-0686.67Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HAH DGRLEE+ LRHIGNQDGLT+IAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

SwissProt top hitse value%identityAlignment
E0X9N4 Putative RING-type E3 ubiquitin transferase C3H691.5e-0466.67Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HA+ DGRLEE+ LRH+  +DG TVIAK+IR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

Q5ZA07 E3 ubiquitin-protein ligase makorin1.2e-0470Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HA+ DGRLEE+ LRH+   DG TVIAKNIR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

Arabidopsis top hitse value%identityAlignment
AT3G08505.1 zinc finger (CCCH-type/C3HC4-type RING finger) family protein9.1e-0560Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HA+ DG LEE+ LRH+G+Q+G TVI  +IR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR

AT3G08505.2 zinc finger (CCCH-type/C3HC4-type RING finger) family protein9.1e-0560Show/hide
Query:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR
        HA+ DG LEE+ LRH+G+Q+G TVI  +IR
Subjt:  HAHWDGRLEEITLRHIGNQDGLTVIAKNIR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCACGCTCATTGGGATGGCCGGTTGGAAGAGATCACTCTGCGTCATATTGGGAATCAAGATGGTCTCACTGTTATCGCCAAAAATATTAGGTTTTGTTTTGTGGA
TTTGCTTCTTGTTGTCTATTTTTGTTCAACGTTACCTTTTATAAATTTGAAGCTATTTTCAGGTTGTCGGAATTTCTCAGTGACTTGCATATCAGGTGAAGAATCATTCC
ATCAGAAGAAGATAAATGGGGATGTCGATGTCGATGTCGATGTCGTGTGTGGTTTGATAGAGAAACAAGAGAAAAGGAAACTTCAAGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCTCACGCTCATTGGGATGGCCGGTTGGAAGAGATCACTCTGCGTCATATTGGGAATCAAGATGGTCTCACTGTTATCGCCAAAAATATTAGGTTTTGTTTTGTGGA
TTTGCTTCTTGTTGTCTATTTTTGTTCAACGTTACCTTTTATAAATTTGAAGCTATTTTCAGGTTGTCGGAATTTCTCAGTGACTTGCATATCAGGTGAAGAATCATTCC
ATCAGAAGAAGATAAATGGGGATGTCGATGTCGATGTCGATGTCGTGTGTGGTTTGATAGAGAAACAAGAGAAAAGGAAACTTCAAGGCTAG
Protein sequenceShow/hide protein sequence
MPHAHWDGRLEEITLRHIGNQDGLTVIAKNIRFCFVDLLLVVYFCSTLPFINLKLFSGCRNFSVTCISGEESFHQKKINGDVDVDVDVVCGLIEKQEKRKLQG