; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18707 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18707
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationCarg_Chr17:7346483..7349015
RNA-Seq ExpressionCarg18707
SyntenyCarg18707
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575660.1 hypothetical protein SDJN03_26299, partial [Cucurbita argyrosperma subsp. sororia]1.8e-57100Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_022953425.1 uncharacterized protein LOC111455984 [Cucurbita moschata]2.6e-5698.41Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_022991945.1 uncharacterized protein LOC111488436 [Cucurbita maxima]3.2e-5496.8Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSFSITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLIST
        FSLLLWMLSSAATSLIGLVVKLIST
Subjt:  FSLLLWMLSSAATSLIGLVVKLIST

XP_023547947.1 uncharacterized protein LOC111806743 [Cucurbita pepo subsp. pepo]1.3e-5597.62Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFAAPPSRLNLTSRPSLIHGAVLPSS AGIQYHSNAFPIPSF YRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKAS DAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

XP_038899532.1 uncharacterized protein LOC120086813 isoform X1 [Benincasa hispida]4.2e-4684.13Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFAAP  RLNLTSRPSLIH A LPSSI  IQ+HSNA P PSFRYRNT+GLELRQRSFSITASNSSD NSIKEENGSSKAS+DAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSL+LW+ SS  TS + LVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

TrEMBL top hitse value%identityAlignment
A0A0A0K9W1 Uncharacterized protein6.5e-3776.56Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRSFSITASNSSDRNSIKEENGSSKASS-DAQGPPFLTILAGI
        MAS+FAAPPS+LNLTSR S IH A LPS IA IQ+HSNA P PSFRYR N  GLELRQR  SI AS S+D NSIKEEN SSKASS DAQGPPFLTILAG 
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYR-NTKGLELRQRSFSITASNSSDRNSIKEENGSSKASS-DAQGPPFLTILAGI

Query:  FVFSLLLWMLSSAATSLIGLVVKLISTK
        FV SL+LW+ SSA TSL+GLVVKLIS K
Subjt:  FVFSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1GPL5 uncharacterized protein LOC1114559841.3e-5698.41Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIF+APPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSD NSIKEENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLISTK
        FSLLLWMLSSAATSLIGLVVKLISTK
Subjt:  FSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1H506 uncharacterized protein LOC1114606322.0e-3873.23Show/hide
Query:  MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIF
        MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRSFSITASNSSD NS KE+N  SK + DAQGPPFLTILAG F
Subjt:  MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIF

Query:  VFSLLLWMLSSAATSLIGLVVKLISTK
        VFSL+LW++SS+ T+LI L VKLISTK
Subjt:  VFSLLLWMLSSAATSLIGLVVKLISTK

A0A6J1JUC2 uncharacterized protein LOC1114884361.5e-5496.8Show/hide
Query:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV
        MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLEL  RSFSITASNSSD NSI+EENGSSKASSDAQGPPFLTILAGIFV
Subjt:  MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFV

Query:  FSLLLWMLSSAATSLIGLVVKLIST
        FSLLLWMLSSAATSLIGLVVKLIST
Subjt:  FSLLLWMLSSAATSLIGLVVKLIST

A0A6J1KVQ7 uncharacterized protein LOC1114980252.4e-3974.8Show/hide
Query:  MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIF
        MAS+FAAPPS+L L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGL+LRQRSFSITASNSSD NS KEEN  SK + DAQGPPFLTILAG F
Subjt:  MASIFAAPPSRLNLTS-RPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIF

Query:  VFSLLLWMLSSAATSLIGLVVKLISTK
        VFSL+LW++SS+ T+LI LVVKLISTK
Subjt:  VFSLLLWMLSSAATSLIGLVVKLISTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTTCGCTGCGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTC
CAATGCCTTTCCAATTCCTTCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCA
AGGAGGAAAATGGTTCGAGTAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCT
GCTGCCACTTCACTTATAGGTCTAGTCGTCAAGCTGATCTCAACGAAGTAG
mRNA sequenceShow/hide mRNA sequence
GATTAAGCACCATCCATTCTCCGCCCACAGTTTCTTGTGAGCTCGCTTCTCTTCCGAAGTTCCGAAGTCTTTGTAATACGAGTGAAGGTGAATGGCTTCCATTTTCGCTG
CGCCGCCGTCTCGACTGAATCTCACTTCTCGCCCAAGTTTGATTCACGGAGCTGTTCTTCCCTCCTCCATCGCCGGCATTCAATATCACTCCAATGCCTTTCCAATTCCT
TCTTTCAGGTACAGGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCCTCAAATTCCTCAGACCGAAACTCCATCAAGGAGGAAAATGGTTCGAG
TAAAGCAAGTAGTGATGCCCAAGGTCCTCCATTCCTTACTATCTTGGCTGGAATTTTTGTCTTTTCCCTCCTACTCTGGATGCTCAGTTCTGCTGCCACTTCACTTATAG
GTCTAGTCGTCAAGCTGATCTCAACGAAGTAGTATGCCATTATTGGCATATTTCATGTTGCCTTAGAAGCTTAAAACCGTGTGGTTATATTCCTATCACACAACTCACTT
ATTAGCTAGTTTTTTTAGCTTACTTCTAATGAATAGTTTTTATTTTCATCTCGTTTATGCCTTGCTTCTGCCTTCAGCTATGTTTAATTGTGAGGAAGGAATTATTCACA
GGCAGTGACTCCATAAACTATAATTAAATGGACTTAACTTATTGTGTAGACTAACCCATCTAAAAATGTCCAAGTCAAGCCTCCTTAGGTGACCCGTCTCGGGAATAGAA
TGTACGAGTCGATAATTTCGTCAAATCTCAAGTATTTTGCTTTCTTATGTACGATTATCAATCGCTTGGAAGTGATTTTGTCAAGTTCAAAATC
Protein sequenceShow/hide protein sequence
MASIFAAPPSRLNLTSRPSLIHGAVLPSSIAGIQYHSNAFPIPSFRYRNTKGLELRQRSFSITASNSSDRNSIKEENGSSKASSDAQGPPFLTILAGIFVFSLLLWMLSS
AATSLIGLVVKLISTK