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Carg18711 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18711
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionClp R domain-containing protein
Genome locationCarg_Chr17:7333996..7334259
RNA-Seq ExpressionCarg18711
SyntenyCarg18711
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575656.1 hypothetical protein SDJN03_26295, partial [Cucurbita argyrosperma subsp. sororia]4.2e-37100Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS

XP_022147203.1 uncharacterized protein LOC111016209 [Momordica charantia]3.0e-1969.47Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG--DGDPDES------RGECGTMFDEGSS
        M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSL+IRRI+AALSD PSG     P+ES       GEC  MF +GSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG--DGDPDES------RGECGTMFDEGSS

XP_022954080.1 uncharacterized protein LOC111456452 [Cucurbita moschata]7.9e-3697.7Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSG GDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS

XP_022991948.1 uncharacterized protein LOC111488440 [Cucurbita maxima]5.5e-2997.37Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSG GDPDESRG
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG

XP_023548863.1 uncharacterized protein LOC111807384 [Cucurbita pepo subsp. pepo]2.7e-3698.85Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG GDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS

TrEMBL top hitse value%identityAlignment
A0A1U7YVL7 uncharacterized protein LOC1045874482.8e-1062.32Show/hide
Query:  LEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG
        LE M     +FLLVQ LVYLILSKSS++FSKN  RS+SFR  RS +IRR +AALSD P+G   P  SRG
Subjt:  LEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG

A0A660KP35 Uncharacterized protein6.1e-1060.29Show/hide
Query:  MMMEIRHL-EGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG
        M+MEI  L + M    A+FLLVQ+LVYLILS SS +FSKN +RSLSFR  RS++I R++A LSD P+G
Subjt:  MMMEIRHL-EGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG

A0A6J1D0M4 uncharacterized protein LOC1110162091.5e-1969.47Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG--DGDPDES------RGECGTMFDEGSS
        M MEI  LEG+  TAAVF LVQILVYLILSKSS VFSKNTKRSLSFR VRSL+IRRI+AALSD PSG     P+ES       GEC  MF +GSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSG--DGDPDES------RGECGTMFDEGSS

A0A6J1GRF7 uncharacterized protein LOC1114564523.8e-3697.7Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSG GDPDESRGECGTMFDEGSS
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS

A0A6J1JXQ0 uncharacterized protein LOC1114884402.7e-2997.37Show/hide
Query:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG
        MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSL+IRRIMAALSDFPSG GDPDESRG
Subjt:  MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G05575.1 unknown protein5.5e-1159.02Show/hide
Query:  EGMAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLTIRRIMAALSDFPSG
        EGM    ++F L+Q LVYLILSKSS VF  SK  KR+ SFR  RS++IRRI+A L D P+G
Subjt:  EGMAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLTIRRIMAALSDFPSG

AT2G31945.1 unknown protein1.6e-1050.63Show/hide
Query:  MAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS
        M    A+F LVQ LVYLIL KSS VF  S + KR+ SFR +RS++IRRI+AAL D P+GD     S G   +  DE ++
Subjt:  MAETAAVFLLVQILVYLILSKSSHVF--SKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATGGAGATTAGGCACTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATTCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTCTTCTC
TAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGACTATTCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCGACGGCGACCCAGACGAAA
GTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATGGAGATTAGGCACTTGGAAGGAATGGCTGAGACTGCAGCCGTGTTCCTCCTTGTGCAGATTCTGGTTTATCTAATTCTCTCTAAATCTTCCCATGTCTTCTC
TAAGAACACGAAGAGGTCTCTTAGTTTCAGACAGGTCCGATCTCTGACTATTCGTCGGATTATGGCAGCTCTCTCCGATTTCCCCTCCGGCGACGGCGACCCAGACGAAA
GTCGTGGGGAATGTGGAACCATGTTTGATGAAGGCAGTTCTTAA
Protein sequenceShow/hide protein sequence
MMMEIRHLEGMAETAAVFLLVQILVYLILSKSSHVFSKNTKRSLSFRQVRSLTIRRIMAALSDFPSGDGDPDESRGECGTMFDEGSS