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Carg18713 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18713
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall heat shock protein HSP20
Genome locationCarg_Chr17:7327854..7328420
RNA-Seq ExpressionCarg18713
SyntenyCarg18713
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575655.1 E3 ubiquitin-protein ligase RING1, partial [Cucurbita argyrosperma subsp. sororia]4.3e-5298.1Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLL+HWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

KAG7014204.1 hypothetical protein SDJN02_24379, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-52100Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFMLI
Subjt:  GFMLI

XP_022953918.1 uncharacterized protein LOC111456323 [Cucurbita moschata]7.3e-5298.1Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

XP_022991944.1 uncharacterized protein LOC111488435 [Cucurbita maxima]2.3e-5094.29Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSST+NSDSQPTFPLHLCFFFLILFMFLAFSW+STYESAVEGVFDQLKLLLI+SPLLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

XP_023548678.1 uncharacterized protein LOC111807266 [Cucurbita pepo subsp. pepo]6.1e-5196.19Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSS SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

TrEMBL top hitse value%identityAlignment
A0A0A0K9W6 Uncharacterized protein4.9e-3881.25Show/hide
Query:  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI
        +N+ SQPTFPLHLCFFFLIL MFL+FSW+S YESAVE VFDQLKLLLIVSPLLLLLL+HWLSN ++G LP L+ LPEKDSLHRAGGTPWGVGF+L+
Subjt:  SNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI

A0A6J1DCG1 uncharacterized protein LOC1110197472.9e-3876.19Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAV  +S     +SQP+FPLHLCFFFLIL MFL FSW+S YESAV+GVFDQLKLLLI SPLLLLL +HWLSN +NGRLPPL+ LPEKDSLHRAG TPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GF+L+
Subjt:  GFMLI

A0A6J1GPN5 uncharacterized protein LOC1114563233.5e-5298.1Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

A0A6J1H718 uncharacterized protein LOC1114606923.2e-3777.14Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MA NG SS +NS SQPTFPLHLCFFFLIL MFL+FSW+S YES VEGVFDQLKLLLIVSPLLLLLL+HWLSN  N        LPEKDSLH AGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GF+L+
Subjt:  GFMLI

A0A6J1JW83 uncharacterized protein LOC1114884351.1e-5094.29Show/hide
Query:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV
        MAVNGDSST+NSDSQPTFPLHLCFFFLILFMFLAFSW+STYESAVEGVFDQLKLLLI+SPLLLLLL+HWLSNGENGRLPPLV LPEKDSLHRAGGTPWGV
Subjt:  MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGV

Query:  GFMLI
        GFML+
Subjt:  GFMLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G21180.1 unknown protein8.4e-0629.09Show/hide
Query:  SSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHR-----------AGG
        SS  +S S    P  +     +  +FL  SW+ + E A E   +Q+   L++ PL L++L+ WLS+ EN    P   L    S  R            G 
Subjt:  SSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHR-----------AGG

Query:  TPWGVGFMLI
        +PWGV  +++
Subjt:  TPWGVGFMLI

AT2G31940.1 unknown protein1.5e-2352.58Show/hide
Query:  NSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSN--GENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI
        + +  P  PLHLC F LIL MF+  SW+++YE  +EG   Q KL L+ SPLLLLL +H+LS+  G  G +  L+ L E++SL+RAGGTPWGV FML+
Subjt:  NSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSN--GENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI

AT5G19875.1 unknown protein7.3e-1848.24Show/hide
Query:  HLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI
        HLCF F+++F  L+F+W+  +ES +E   D LKL+ I +PL LLLL+H+ S G    L   V  PE+DS+HRAG +PWGV  +L+
Subjt:  HLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTG
GCACTCGACTTACGAGTCGGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTTCACTGGCTCTCCAATGGTG
AAAACGGCCGCCTACCGCCCCTCGTCTCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGATATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGTCAATGGAGACTCCTCCACCTCAAATTCCGACTCTCAGCCCACTTTTCCTCTTCATCTCTGCTTCTTCTTTCTCATCCTCTTCATGTTCTTGGCCTTCTCTTG
GCACTCGACTTACGAGTCGGCTGTTGAAGGCGTTTTCGATCAGCTCAAGCTTCTTCTCATCGTCTCGCCACTCCTCCTCCTCCTCCTCCTTCACTGGCTCTCCAATGGTG
AAAACGGCCGCCTACCGCCCCTCGTCTCCCTACCGGAAAAGGACTCGCTCCACCGCGCTGGAGGGACACCGTGGGGAGTTGGGTTTATGTTGATATAA
Protein sequenceShow/hide protein sequence
MAVNGDSSTSNSDSQPTFPLHLCFFFLILFMFLAFSWHSTYESAVEGVFDQLKLLLIVSPLLLLLLLHWLSNGENGRLPPLVSLPEKDSLHRAGGTPWGVGFMLI