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Carg18719 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18719
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionNuclear pore complex protein
Genome locationCarg_Chr17:7276546..7278719
RNA-Seq ExpressionCarg18719
SyntenyCarg18719
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575646.1 hypothetical protein SDJN03_26285, partial [Cucurbita argyrosperma subsp. sororia]4.0e-7498.63Show/hide
Query:  KSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVK
        +SSGRTVSERSAAGLAGLSTIAVRL GGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVK
Subjt:  KSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVK

Query:  VMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        VMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
Subjt:  VMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

KAG7014198.1 hypothetical protein SDJN02_24373, partial [Cucurbita argyrosperma subsp. argyrosperma]5.0e-93100Show/hide
Query:  SNYFLIFQFISLLLCLSLSCSLCNFISLLIAISLPKSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVR
        SNYFLIFQFISLLLCLSLSCSLCNFISLLIAISLPKSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVR
Subjt:  SNYFLIFQFISLLLCLSLSCSLCNFISLLIAISLPKSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVR

Query:  RVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        RVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
Subjt:  RVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

KGN45194.1 hypothetical protein Csa_015637 [Cucumis sativus]9.6e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSH+PKRK RPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

XP_022991946.1 uncharacterized protein LOC111488437 [Cucurbita maxima]6.7e-4597.85Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWE+LRRSESELV HRPKRKLRPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

XP_023548962.1 uncharacterized protein LOC111807461 [Cucurbita pepo subsp. pepo]2.3e-4598.92Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV HRPKRKLRPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

TrEMBL top hitse value%identityAlignment
A0A0A0K8I7 Uncharacterized protein4.7e-4495.7Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSH+PKRK RPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

A0A1S4E346 uncharacterized protein LOC1079917961.0e-4394.62Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSH+PKRK RPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

A0A5A7UWX2 Uncharacterized protein4.4e-4291.67Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNH---AAAASSYTATHA
        MELWHKMIFPVRRVWL VS+RVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSH+PKRK RPFWRVSVWSNH   AAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNH---AAAASSYTATHA

A0A6J1CR01 uncharacterized protein LOC1110134233.9e-4393.55Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWL VSARVRARK+GAGLLKLHDDVETCGYEDVKVMWEMLRRSESELV H+PKRK RPFWRVSVWSNHAAAASS+TATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

A0A6J1JS76 uncharacterized protein LOC1114884373.2e-4597.85Show/hide
Query:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA
        MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWE+LRRSESELV HRPKRKLRPFWRVSVWSNHAAAASSYTATHA
Subjt:  MELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43150.1 unknown protein2.5e-1036.25Show/hide
Query:  RFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL---VSHRPKRKLRPFWRV
        R+ E W+ M FP RR+W   + RV  R S  GLL+L  DV +C YED+ +MW +L ++E      +  + +++ +P W +
Subjt:  RFMELWHKMIFPVRRVWLTVSARVRARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESEL---VSHRPKRKLRPFWRV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
TCTAACTATTTTTTAATCTTCCAATTCATTTCACTGTTGCTCTGTCTCTCTCTCTCTTGCTCTCTCTGCAATTTCATAAGTCTTCTGATCGCAATTTCACTACCGAAGAG
CAGCGGAAGGACCGTGAGTGAAAGGAGTGCGGCAGGTCTGGCCGGGCTCAGCACCATAGCCGTTCGACTTGGCGGCGGCGGCGGCGGCGGATTTTGGTACCGGAGGAAAA
AGAAGACACGGAGCAGGAGTAAGACGAAAGTTAAGCATCGGTTTATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCACTGTTTCCGCTCGTGTT
AGGGCTCGGAAGAGTGGAGCTGGGCTTCTGAAGCTTCATGATGACGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGCTGCGTCGATCAGAGTCGGA
ACTAGTCAGTCACCGACCGAAGCGCAAGCTGCGGCCGTTTTGGAGAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCCTCTTACACTGCAACTCATGCGTGA
mRNA sequenceShow/hide mRNA sequence
TCTAACTATTTTTTAATCTTCCAATTCATTTCACTGTTGCTCTGTCTCTCTCTCTCTTGCTCTCTCTGCAATTTCATAAGTCTTCTGATCGCAATTTCACTACCGAAGAG
CAGCGGAAGGACCGTGAGTGAAAGGAGTGCGGCAGGTCTGGCCGGGCTCAGCACCATAGCCGTTCGACTTGGCGGCGGCGGCGGCGGCGGATTTTGGTACCGGAGGAAAA
AGAAGACACGGAGCAGGAGTAAGACGAAAGTTAAGCATCGGTTTATGGAGCTTTGGCACAAGATGATTTTCCCTGTCCGACGAGTTTGGCTCACTGTTTCCGCTCGTGTT
AGGGCTCGGAAGAGTGGAGCTGGGCTTCTGAAGCTTCATGATGACGTAGAAACCTGTGGATATGAAGATGTGAAGGTGATGTGGGAAATGCTGCGTCGATCAGAGTCGGA
ACTAGTCAGTCACCGACCGAAGCGCAAGCTGCGGCCGTTTTGGAGAGTCTCTGTGTGGTCCAACCATGCTGCTGCAGCCTCCTCTTACACTGCAACTCATGCGTGAGGCC
ATCAAACCAACACTCAGCTTCGTCAATTCTGCGCCATCTCTTTGGTATCTTCACCGTTTTTTCAGAACTAACAGCCAATGCTTGCAATGGTACGGAACTTTTTACCAAAC
TTGTTCAAAGAAATGTGAAGTCTTTGCACACGCAGTCCATCTCTTCCACTTTGAGCAGACAAACACCCTTTTGTAAATAATAATAAAATTTTGTGTTCGTAGCTAAGAA
Protein sequenceShow/hide protein sequence
SNYFLIFQFISLLLCLSLSCSLCNFISLLIAISLPKSSGRTVSERSAAGLAGLSTIAVRLGGGGGGGFWYRRKKKTRSRSKTKVKHRFMELWHKMIFPVRRVWLTVSARV
RARKSGAGLLKLHDDVETCGYEDVKVMWEMLRRSESELVSHRPKRKLRPFWRVSVWSNHAAAASSYTATHA