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Carg18776 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18776
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionactivating signal cointegrator 1 complex subunit 1
Genome locationCarg_Chr08:3931137..3932395
RNA-Seq ExpressionCarg18776
SyntenyCarg18776
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593476.1 hypothetical protein SDJN03_12952, partial [Cucurbita argyrosperma subsp. sororia]3.2e-34100Show/hide
Query:  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE
        MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE
Subjt:  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSE

KAG7025820.1 hypothetical protein SDJN02_12318 [Cucurbita argyrosperma subsp. argyrosperma]3.5e-41100Show/hide
Query:  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI
        MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI
Subjt:  MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI

XP_022149236.1 uncharacterized protein LOC111017681 isoform X3 [Momordica charantia]6.0e-1770Show/hide
Query:  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE +
Subjt:  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

XP_022954065.1 uncharacterized protein LOC111456441 isoform X2 [Cucurbita moschata]7.8e-1772.31Show/hide
Query:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   ASPSE +
Subjt:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

XP_023549271.1 activating signal cointegrator 1 complex subunit 1-like isoform X2 [Cucurbita pepo subsp. pepo]3.9e-1670.77Show/hide
Query:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        D+AGVANDSLQVSFQGLY  +GWSL ANM  KKEF   ADQKKK KT++Q WRPV   ASPSE +
Subjt:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

TrEMBL top hitse value%identityAlignment
A0A0A0K963 KH domain-containing protein4.1e-1148.89Show/hide
Query:  LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        LN LC SGR    +     +  F+                GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA PSE +
Subjt:  LNDLCRSGRDQAGVANDSLQVSFQ----------------GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

A0A1S3CGC2 activating signal cointegrator 1 complex subunit 11.0e-0970Show/hide
Query:  GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE +
Subjt:  GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

A0A5D3C0W5 Activating signal cointegrator 1 complex subunit 11.0e-0970Show/hide
Query:  GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        GLYA +GW L ANMTGK EF SAADQKKK KT+SQ WRPV  HA  SE +
Subjt:  GLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

A0A6J1D7S4 uncharacterized protein LOC111017681 isoform X32.9e-1770Show/hide
Query:  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        C    D+AG+ANDSLQVSFQG YA +G SL  NMTG+KEF SAADQKKK KT+SQ WRPV  HASPSE +
Subjt:  CRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

A0A6J1GRE7 uncharacterized protein LOC111456441 isoform X23.8e-1772.31Show/hide
Query:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM
        D+AGVANDSLQVSFQGLY  +GWSL ANM GKKEF   ADQKKK KT++Q WRPV   ASPSE +
Subjt:  DQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAATGATCTGTGCAGGTCCGGTCGCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGC
GAATATGACTGGTAAAAAGGAATTCTGGAGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGG
GTATGTGGAATTTATATTACAATAGCATATAA
mRNA sequenceShow/hide mRNA sequence
ATTAATTAATTAATCGTTTATATTTCCATATTTCATCCTTCGCACGTGGAGAAGGTACGTGCGAATTCCTTTCTCGTCCATTATGCTGAATGATCTGTGCAGGTCCGGTC
GCGACCAGGCAGGGGTTGCGAATGATAGTTTGCAGGTCTCTTTTCAGGGACTCTATGCTGATGACGGTTGGAGCCTGAAGGCGAATATGACTGGTAAAAAGGAATTCTGG
AGTGCTGCTGACCAGAAGAAAAAGCCCAAAACAGTCAGCCAAACATGGAGACCTGTGTACATGCACGCCAGCCCTTCTGAGGGTATGTGGAATTTATATTACAATAGCAT
ATAACTGTAGCCGTGCAGTTTGGGAATTGACAAATCAATATTTATAACCTAAACATTTCATCTAATGGTACTTATGTTTAAGTTGTGGAACAAGGAGTGAGTTGAGGCTG
CTTCTGAAGTTCTGAGAGTGATTATACTTACTAACTGGACACTTGTTGTGAGATCCTACCTCGATTGGAGAGGGGAACGAGTGC
Protein sequenceShow/hide protein sequence
MLNDLCRSGRDQAGVANDSLQVSFQGLYADDGWSLKANMTGKKEFWSAADQKKKPKTVSQTWRPVYMHASPSEGMWNLYYNSI