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Carg18786 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18786
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein CURVATURE THYLAKOID 1C, chloroplastic
Genome locationCarg_Chr08:3885977..3890361
RNA-Seq ExpressionCarg18786
SyntenyCarg18786
Gene Ontology termsGO:0009579 - thylakoid (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR025564 - Cyanobacterial aminoacyl-tRNA synthetase, CAAD domain
IPR033344 - Protein CURVATURE THYLAKOID 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593469.1 Malonate--CoA ligase, partial [Cucurbita argyrosperma subsp. sororia]6.2e-5280.14Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV                             AVDKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

KAG7025810.1 Protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]1.4e-56100Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNR
        MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNR
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNR

Query:  EELLQIINKSVADVLGQ
        EELLQIINKSVADVLGQ
Subjt:  EELLQIINKSVADVLGQ

XP_022964632.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita moschata]1.4e-5179.45Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASIFATLPPPLLAPGKSFTPLFTYQ+KLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV                             AVDKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

XP_023000405.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Cucurbita maxima]3.8e-4978.08Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASIFATLPPPLLAPGKSF PLFTYQ K+TVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV                             AVDKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

XP_038897597.1 protein CURVATURE THYLAKOID 1C, chloroplastic [Benincasa hispida]2.3e-3866.44Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASI ATLPPPLLAP KSFT L T Q KLT FPIA  RS N +VKA+G SSESSTS+DIIKSVRNV                             A+DKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIG LVSWWFVYRYLLFKPNREELLQIINKS+ DV GQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

TrEMBL top hitse value%identityAlignment
A0A0A0KC66 CAAD domain-containing protein1.2e-3763.01Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASI ATLPPPLLAP KSFT +    +KL+VF  A GRS N +VKA+G SSESSTS+DI+KSVRNV                             A+DKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIG LVSWWFVYRYLLFKPNREELLQIINKS+ DV GQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

A0A5D3BWY3 Protein CURVATURE THYLAKOID 1C4.7e-3763.01Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASI ATLPPPLLAP KSFT +    +KL+V   AKGR  N +VKA+G SSESSTS+DIIKSVRNV                             A+DKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIG LVSWWFVYRYLLFKPNREELLQIINKS+ DV GQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

A0A6J1CUT1 protein CURVATURE THYLAKOID 1C, chloroplastic2.1e-3765.75Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASI A+LPPPLLAPGKSFT L T Q KLTVFPIAK RSA  +VKA GDSS+SS S+ IIKSV+N+                             A+DKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPG+LEFIG LVSWWFVYRYLLFKPNREELLQIINKS+ADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

A0A6J1HLG0 protein CURVATURE THYLAKOID 1C, chloroplastic6.7e-5279.45Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASIFATLPPPLLAPGKSFTPLFTYQ+KLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV                             AVDKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

A0A6J1KFS9 protein CURVATURE THYLAKOID 1C, chloroplastic1.8e-4978.08Show/hide
Query:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL
        MASIFATLPPPLLAPGKSF PLFTYQ K+TVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV                             AVDKL
Subjt:  MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNV-----------------------------AVDKL

Query:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
Subjt:  PLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

SwissProt top hitse value%identityAlignment
O04616 Protein CURVATURE THYLAKOID 1A, chloroplastic4.1e-0646Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG
        A++ +PLLP V+E +G+  + WFVYRYLLFK +R+EL + I      + G
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG

Q119Z5 Glutamate--tRNA ligase2.7e-0543.14Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
        A+D +P+L  + E IG++   WFVYRYLL + NR+ELL  I     ++ G+
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

Q8LCA1 Protein CURVATURE THYLAKOID 1B, chloroplastic1.1e-0850Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG
        A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+LG
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG

Q8LDD3 Protein CURVATURE THYLAKOID 1D, chloroplastic1.3e-0442Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG
        +++ +PL P ++E +G+  + WF  RYLLFK NREEL   +++    VLG
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG

Q9M812 Protein CURVATURE THYLAKOID 1C, chloroplastic2.1e-1839.1Show/hide
Query:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNV------------------------
        MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+SS+SST +D++ +++NV                        
Subjt:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNV------------------------

Query:  -----AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
             A+DKLP++    E +GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Subjt:  -----AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

Arabidopsis top hitse value%identityAlignment
AT1G52220.1 FUNCTIONS IN: molecular_function unknown1.5e-1939.1Show/hide
Query:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNV------------------------
        MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+SS+SST +D++ +++NV                        
Subjt:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNV------------------------

Query:  -----AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
             A+DKLP++    E +GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Subjt:  -----AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

AT1G52220.2 FUNCTIONS IN: molecular_function unknown3.3e-1938.71Show/hide
Query:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRN-------------------------
        MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+SS+SST +D++ +++N                         
Subjt:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRN-------------------------

Query:  ---VAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ
            A+DKLP++    E +GIL S WF YRYLLFKP+R+EL +I+ KSVAD+LGQ
Subjt:  ---VAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLGQ

AT1G52220.3 FUNCTIONS IN: molecular_function unknown3.4e-2448.03Show/hide
Query:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFV
        MASI ATLP PLL   +  + T +      LT     + P++  R+ + I   VKA G+SS+SST +D++ +++NVA+DKLP++    E +GIL S WF 
Subjt:  MASIFATLPPPLLAPGK--SFTPLFTYQRKLT-----VFPIAKGRSANGI---VKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFV

Query:  YRYLLFKPNREELLQIINKSVADVLGQ
        YRYLLFKP+R+EL +I+ KSVAD+LGQ
Subjt:  YRYLLFKPNREELLQIINKSVADVLGQ

AT2G46820.1 photosystem I P subunit8.2e-1050Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG
        A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+LG
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG

AT2G46820.2 photosystem I P subunit8.2e-1050Show/hide
Query:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG
        A+D+LPL+PGVLE +GI  + WF Y+ L+FKP+RE L + +  +  D+LG
Subjt:  AVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKSVADVLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATTTTTGCTACTCTACCTCCGCCATTGTTGGCCCCTGGCAAAAGCTTCACTCCTCTGTTTACTTATCAGAGGAAGCTCACTGTTTTTCCCATTGCAAAGGG
ACGTTCTGCCAATGGTATTGTAAAGGCTATTGGAGACAGCTCTGAATCTTCTACTTCCATTGATATTATTAAGTCTGTTCGAAATGTTGCTGTTGACAAGCTACCACTGC
TTCCAGGTGTATTAGAATTCATAGGAATCCTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACCGGGAAGAGCTTTTGCAGATAATCAACAAATCA
GTAGCAGATGTATTGGGACAGTAA
mRNA sequenceShow/hide mRNA sequence
AAAATCTTTGTGGTGCAGGTTGAAGCAGCGAAGCACCGAAGGTCCGAAGTCTTATCTTCTGTACGTACAAGCGTAGGTTCGTCAATCCAAGGCCACGAGTTCCCGATAAT
CCCAAATTTTCTACTTAATTTTTGATTTGGGAGTGTAAATTTCACTCAAACTTCATTGATTTCCGTTACTACTCACTAATCATGGCTTCCATTTTTGCTACTCTACCTCC
GCCATTGTTGGCCCCTGGCAAAAGCTTCACTCCTCTGTTTACTTATCAGAGGAAGCTCACTGTTTTTCCCATTGCAAAGGGACGTTCTGCCAATGGTATTGTAAAGGCTA
TTGGAGACAGCTCTGAATCTTCTACTTCCATTGATATTATTAAGTCTGTTCGAAATGTTGCTGTTGACAAGCTACCACTGCTTCCAGGTGTATTAGAATTCATAGGAATC
CTGGTTTCTTGGTGGTTCGTGTATCGCTACCTCTTGTTCAAACCAAACCGGGAAGAGCTTTTGCAGATAATCAACAAATCAGTAGCAGATGTATTGGGACAGTAAATTGC
TCCTGTTCTTAAAGCTCCGATTTGGTACAATCTTCATTATCTTCGTTATATTTTACAAAGTGGTGAGTAAAGAGGGTTGGCCGCTGGGTTGGTTTCTGAATTGTTTTCAA
CTCTCAAAAGTGTGAATTTTAACTAATGTTGGTGTTTGATTCATCAATGCATTCCAATCCCAAATCTTCAATTCTGTAGTTTATACCTATATCAGTTTATGCTTCAAAAA
TTTCTGTCATTGTTTCTTATAAAATCTATGCTTTTATTTGATATTATTTCTTGGTTTCTTGAGTATACACTAGGAATTTCACTAGCTAGAGTTTGAAGTTCATCATATCA
TGTAATGCATAGTTTAGTTTACTGATGTTGGATTTTGATTTTGAGAGCGAGGTTATGCAACTACATTGTGCTATGTAGATTTTAGATTTGAAGAAGATCAGTAGAAAGAA
TCATAGAACAATGGCTATTCACTTGCAGCCGTGACTCCGCTGTCGAGCGATCGGTAGCAACAGATAAATCATGCCTCTCACATATCGGCTAGATCTCTCCATCCTCAGTG
TGGCCTGAGGTTTAGTTTCTCCATCTCTAGCTCTCGTTTCCGATTTCAAAATCGATCTCTGTTTTTATCACAACTTTGTGCCTCAAAATTCCAAAACCCAAGAGAGGCTG
AAAAGTAACCAATTGGTTCGGATTAAAACCGATTTTTCGTTTGCTCAACACTGGTCGGTCTTAA
Protein sequenceShow/hide protein sequence
MASIFATLPPPLLAPGKSFTPLFTYQRKLTVFPIAKGRSANGIVKAIGDSSESSTSIDIIKSVRNVAVDKLPLLPGVLEFIGILVSWWFVYRYLLFKPNREELLQIINKS
VADVLGQ