; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18788 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18788
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description30S ribosomal protein S17, chloroplastic
Genome locationCarg_Chr08:3873184..3873875
RNA-Seq ExpressionCarg18788
SyntenyCarg18788
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019979 - Ribosomal protein S17, conserved site
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593467.1 30S ribosomal protein S17, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]5.9e-100100Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVVLFPSKFSLFLRLV
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVVLFPSKFSLFLRLV
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVVLFPSKFSLFLRLV

XP_022964008.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita moschata]1.7e-7898.73Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

XP_023000403.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita maxima]8.3e-7898.09Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATL PSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

XP_023513636.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]4.9e-7898.09Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSK+KVAEAAAGDLGIPLESQQQ
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

XP_023548191.1 30S ribosomal protein S17, chloroplastic-like [Cucurbita pepo subsp. pepo]1.9e-6686.16Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        M ATL+PSS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSI+AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        AHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQQQ
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

TrEMBL top hitse value%identityAlignment
A0A1S3CGC8 30S ribosomal protein S17, chloroplastic1.1e-6482.32Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSP----PQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
        M  TL  SS+LQIPPLQ  KKLS+S++FLHGSTPLSFLSKP+SSP     QT NFLPSIRAM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSP----PQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKK

Query:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQNL
        YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPAR SK+K AE    G+LGIPLESQQ+ +
Subjt:  YQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAA-AGDLGIPLESQQQNL

A0A6J1GQP3 30S ribosomal protein S17, chloroplastic-like3.0e-6584.71Show/hide
Query:  ATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        + L+PSS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSI+AM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  ATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA AG+LGIPLESQ+Q
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

A0A6J1HJK0 30S ribosomal protein S17, chloroplastic8.1e-7998.73Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATLNPSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

A0A6J1JVM9 30S ribosomal protein S17, chloroplastic-like1.1e-6484.91Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
        M ATL+ SS LQIPPLQR K LS+ST+FLHGS PLSFLSKP+   S  QT NFLPSIRAM+SLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPAS--SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQ

Query:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        AHDPDN+FKVGDFVELEKCRPISKMKTFLAIPVPARNSK K AEA  G+L IPLESQQQ
Subjt:  AHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

A0A6J1KMI9 30S ribosomal protein S17, chloroplastic4.0e-7898.09Show/hide
Query:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
        MFATL PSSVLQIPPLQRFKKLSLST+FLHGSTPLSFLSKPA SPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH
Subjt:  MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAH

Query:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
        DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ
Subjt:  DPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQ

SwissProt top hitse value%identityAlignment
P16180 30S ribosomal protein S17, chloroplastic3.1e-4370.8Show/hide
Query:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
        L LS+ F HGSTPLS LSKP S P   +  L P IRAMK++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPI
Subjt:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI

Query:  SKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ
        SK K+F+A+PV AR +++  AEA   + LG+PLESQQ
Subjt:  SKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ

P17092 30S ribosomal protein S17, chloroplastic (Fragment)3.1e-3561.42Show/hide
Query:  LSFLSKPASSP---PQTLNF-LPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIP
        L+  S P SSP    QT +   P+I+AMK+++G+VVCA+ +KTVAVEV RLAPHPKY++RIR+KKKYQAHDP+N FKVGD V+L K RPISK KTFLA+P
Subjt:  LSFLSKPASSP---PQTLNF-LPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIP

Query:  VPARNSKQKVAEAAAGDLGIPLESQQQ
         P+R SK+     ++G+LGIPL+SQQ+
Subjt:  VPARNSKQKVAEAAAGDLGIPLESQQQ

P82137 30S ribosomal protein S17, chloroplastic3.9e-3859.35Show/hide
Query:  PPLQRFKKLSLSTTFLHGST----------PLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD
        PPL      S    FLHG+T           LS  S P SS   T    P I+AM+S+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPD
Subjt:  PPLQRFKKLSLSTTFLHGST----------PLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPD

Query:  NQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KQKVAEAAAGDLGIPLESQ
        NQFKVGD+V+L+KCRPISK KTFLA+    R S   + K  +AA+ +LGIPLESQ
Subjt:  NQFKVGDFVELEKCRPISKMKTFLAIPVPARNS---KQKVAEAAAGDLGIPLESQ

Q9TJN6 30S ribosomal protein S17, chloroplastic1.8e-2760.17Show/hide
Query:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPIS
        L LS+ F+  S P   LS   + P         I A + L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL+  RPIS
Subjt:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPIS

Query:  KMKTFLAIPVPARNSKQK
        K K FLAIP+P R++++K
Subjt:  KMKTFLAIPVPARNSKQK

Q9ZST1 30S ribosomal protein S17, chloroplastic1.3e-2865.38Show/hide
Query:  IRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLES
        I+A K L GRVV    DKTV VEVVRLAPHPKYKRR RIKKKYQAHDPDNQFKVGD VEL + RPISK K FLA+P+P R++++K        L  PL+S
Subjt:  IRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLES

Query:  QQQN
        Q Q+
Subjt:  QQQN

Arabidopsis top hitse value%identityAlignment
AT1G79850.1 ribosomal protein S172.2e-4470.8Show/hide
Query:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI
        L LS+ F HGSTPLS LSKP S P   +  L P IRAMK++QGRVVCAT+DKTVAVEVVRLAPHPKYKRR+R+KKKYQAHDPDNQFKVGD V LEK RPI
Subjt:  LSLSTTFLHGSTPLSFLSKPASSPPQTLNFL-PSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGDFVELEKCRPI

Query:  SKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ
        SK K+F+A+PV AR +++  AEA   + LG+PLESQQ
Subjt:  SKMKTFLAIPVPARNSKQKVAEAAAGD-LGIPLESQQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCAACTCTAAATCCCTCGTCCGTCCTGCAAATTCCTCCATTACAGAGATTCAAGAAGCTCTCACTTTCCACCACTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGCCTGCATCCTCGCCTCCCCAAACTCTCAATTTCCTCCCCTCCATTAGGGCGATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCG
TTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGAC
TTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGA
CCTTGGGATTCCATTGGAGTCTCAGCAACAGAATCTCTATTCGTCTCTGCAATTGATGCGTCTGAACAGTGAGATAACTGCCGATGATTATGGTGTGGTATTGTTCCCGT
CCAAATTCTCTTTATTCTTGCGTTTGGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCAACTCTAAATCCCTCGTCCGTCCTGCAAATTCCTCCATTACAGAGATTCAAGAAGCTCTCACTTTCCACCACTTTCCTCCATGGCTCAACTCCTCTCTCATT
CCTCTCTAAGCCTGCATCCTCGCCTCCCCAAACTCTCAATTTCCTCCCCTCCATTAGGGCGATGAAGTCCCTGCAAGGCCGCGTGGTCTGCGCCACCAACGACAAGACCG
TTGCCGTCGAAGTCGTGCGATTGGCGCCTCATCCGAAGTACAAACGGCGCATCAGAATCAAGAAGAAGTACCAGGCACACGATCCGGATAACCAGTTCAAGGTCGGAGAC
TTTGTGGAGCTTGAGAAATGCCGGCCGATTAGCAAGATGAAGACGTTCCTCGCCATTCCGGTTCCGGCAAGGAATTCGAAGCAGAAGGTGGCGGAAGCTGCGGCTGGGGA
CCTTGGGATTCCATTGGAGTCTCAGCAACAGAATCTCTATTCGTCTCTGCAATTGATGCGTCTGAACAGTGAGATAACTGCCGATGATTATGGTGTGGTATTGTTCCCGT
CCAAATTCTCTTTATTCTTGCGTTTGGTCTAG
Protein sequenceShow/hide protein sequence
MFATLNPSSVLQIPPLQRFKKLSLSTTFLHGSTPLSFLSKPASSPPQTLNFLPSIRAMKSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFKVGD
FVELEKCRPISKMKTFLAIPVPARNSKQKVAEAAAGDLGIPLESQQQNLYSSLQLMRLNSEITADDYGVVLFPSKFSLFLRLV