CuGenDBv2

Gene ID	Carg18799
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ATP-dependent RNA helicase DDX11
Genome location	Carg_Chr08:3835959..3836546
RNA-Seq Expression	Carg18799
Synteny	Carg18799
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6593457.1 hypothetical protein SDJN03_12933, partial [Cucurbita argyrosperma subsp. sororia]

7.5e-103

100

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Query:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA
        MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA
Subjt:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

XP_016902859.1 PREDICTED: uncharacterized protein LOC107991904 [Cucumis melo]

7.4e-74

74.76

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----
        MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

XP_023000396.1 uncharacterized protein LOC111494654 [Cucurbita maxima]

1.6e-100

97.44

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Query:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA
        MLL+ETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGS+RTSKEN KEQEEQGLPRIRQEKA
Subjt:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        V EKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

XP_031744975.1 uncharacterized protein LOC116405196 [Cucumis sativus]

6.2e-73

73.79

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----
        MLLK+TI       HKTLENFK+LFFKGFQKLQKPTS +   CSKG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

XP_038900276.1 uncharacterized protein LOC120087356 [Benincasa hispida]

6.6e-75

75.24

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----E
        MLLKETI       HKTLENFK  FFKGFQKLQKPTS + F CSKG PQ QHTHPT+R+YIDFYDEWQSTL KAAKRS+D G++ TSKEN+K+++    +
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----E

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR RQEK VKEKKK G +H RKGDVK+ S RS+GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE S +S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRRL
Subjt:  SSKRRL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAF5 Uncharacterized protein

3.0e-73

73.79

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----
        MLLK+TI       HKTLENFK+LFFKGFQKLQKPTS +   CSKG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A1S4E3Q5 uncharacterized protein LOC107991904

3.6e-74

74.76

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----
        MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A5D3BXY4 Putative ATP-dependent RNA helicase DDX11

3.6e-74

74.76

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----
        MLLKETI       HKTLE+FK LFFKGFQKLQKPTS + F CSKG  +PQHTHPT+R+YIDFYDEWQSTL KAAKRSID+GS+  SKEN+K+++     
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEE----

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  PR +QEKAVKEKKK G +H RKGDVK+ S RS+GLV+KMKELEMLDR DMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMD+HSE SVPE SA+SMN
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A6J1DP45 uncharacterized protein LOC111022197

2.0e-72

74.76

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Query:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----E
        MLLK TI       HKTLENFK+LF +GFQKLQKPTS   F C KGNP   HTHPT+R+YIDFYDEWQSTLHKAAKRSID GS  TSK NMK+++    +
Subjt:  MLLKETI-------HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQE----E

Query:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN
        Q  P+ RQEKAVKEKKK G +H RKGD+K+ S R +GLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVD+FFMDIHSEFSVPE SA S+N
Subjt:  QGLPRIRQEKAVKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMN

Query:  SSKRRL
        SSKRR+
Subjt:  SSKRRL

A0A6J1KFS0 uncharacterized protein LOC111494654

7.6e-101

97.44

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Query:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA
        MLL+ETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGS+RTSKEN KEQEEQGLPRIRQEKA
Subjt:  MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKA

Query:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
        V EKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELD+EEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL
Subjt:  VKEKKKQGNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G15260.1 unknown protein

1.0e-12

39.2

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Query:  RTSKENMKEQEEQGLPRIRQEKAVKE---KKKQGNTHFRK-----GDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR
        R   E+ + Q ++    I  + AV +   +K   N H +K        +   +R D L QKMK+L M+D  D++  LD+ EA+  YS +RSPVYL+IVD 
Subjt:  RTSKENMKEQEEQGLPRIRQEKAVKE---KKKQGNTHFRK-----GDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDR

Query:  FFMDIHSEFSVPEASAKSMNSSKRR
        FF D++ EFS P  SAK +N S+R+
Subjt:  FFMDIHSEFSVPEASAKSMNSSKRR

AT3G16070.1 unknown protein

7.7e-13

29.59

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Query:  HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQ
        H+TL + K +  +  +KL +P +       + N     +   + IY  F + W+S L  + +  +        K   K QE++   ++++ +A       
Subjt:  HKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQ

Query:  GNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS
                     SR  D + +K+ E+ M +  D+EQ LD+EEA+HYYSR+ SPVYL IVD+FF D++S
Subjt:  GNTHFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHS

AT3G24535.1 unknown protein

5.9e-05

34.78

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Query:  KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR
        K+KE+E +   D+  +     D+ E +H YSRLR   YL++V+ FFM+++S+F  P     +  + +RR
Subjt:  KMKELEMLDRGDMEQE----LDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRR

Sequences

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CDS sequence

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ATGCTGCTAAAAGAAACCATCCACAAAACTCTTGAAAACTTCAAGCATTTATTCTTCAAAGGGTTTCAAAAGCTGCAGAAACCCACTTCCTTCCTCCTCTTTCCATGCAG
CAAAGGAAACCCACAGCCACAGCATACCCATCCAACAGAGAGAATCTACATTGATTTTTATGATGAGTGGCAGTCCACACTGCATAAAGCAGCAAAGAGAAGCATTGACA
GAGGCAGTCTGAGAACATCCAAGGAAAACATGAAGGAACAAGAAGAACAAGGCCTTCCAAGGATCAGACAAGAGAAGGCTGTGAAAGAGAAGAAGAAACAAGGAAATACC
CATTTCAGAAAAGGTGATGTTAAAAGCTGTAGTAGGAGAAGTGATGGATTAGTACAAAAAATGAAGGAATTGGAGATGTTGGATAGAGGAGATATGGAACAAGAGTTGGA
TATTGAAGAAGCAATTCATTACTACTCTCGCTTAAGAAGTCCTGTTTATCTTGAAATTGTGGACAGGTTTTTCATGGACATACACTCTGAATTCTCTGTTCCTGAGGCTT
CTGCGAAGAGTATGAACAGCTCAAAGAGGAGGTTATAG

mRNA sequence

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Protein sequence

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MLLKETIHKTLENFKHLFFKGFQKLQKPTSFLLFPCSKGNPQPQHTHPTERIYIDFYDEWQSTLHKAAKRSIDRGSLRTSKENMKEQEEQGLPRIRQEKAVKEKKKQGNT
HFRKGDVKSCSRRSDGLVQKMKELEMLDRGDMEQELDIEEAIHYYSRLRSPVYLEIVDRFFMDIHSEFSVPEASAKSMNSSKRRL

Carg18799 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome