CuGenDBv2

Gene ID	Carg18829
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	WD repeat-containing protein 43
Genome location	Carg_Chr08:3700816..3702812
RNA-Seq Expression	Carg18829
Synteny	Carg18829
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0005730 - nucleolus (cellular component)
InterPro domains	IPR007148 - Small-subunit processome, Utp12

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593430.1 WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-208

99.5

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVLNIGYPAKEDANI LEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

KAG7025769.1 WD repeat-containing protein 43, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.4e-209

100

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

XP_022964606.1 WD repeat-containing protein 43 isoform X1 [Cucurbita moschata]

4.2e-209

99.75

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

XP_022964607.1 WD repeat-containing protein 43 isoform X2 [Cucurbita moschata]

2.1e-200

97.25

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVL          NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

XP_023513462.1 WD repeat-containing protein 43 [Cucurbita pepo subsp. pepo]

7.7e-203

96.75

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        +SAGKLS+GPVLSMKHPPFVSECRNI+NGEDSIVVLSVSVSGVAYLWKLKFLSE KV+PTKVTVKVNNVESAEE+HGSAKKNRISV+SSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVLNIGYPAKED NIALEKEGPHEI+QAVTSPKSKKSKKKRAASDLDSQ AGDVSDVGNED SNVLFNDDLNEPTMGDKLASLNLE+
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD+EAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CDX9 WD repeat-containing protein 43

1.1e-165

79.56

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGK S+GPVLSM HPPFVSECRN++N EDS+VVLSVSVSG AYLWKLK LSED+V PTKV+VK N+ +SAEENHGSAKKNR+SVL+S I  +GDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALE-----------KEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTM
        VLVTHGS+DLPQH++L+IGY  KEDAN A E           ++GPHEI+Q +T PKSKKSKKKRAASDLDS  AGDVSDVGN D S+V+FNDDLNEP+M
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALE-----------KEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTM

Query:  GDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL
        G+KLASLNL +QNED   EQ++PSVP IPPSADSVQVLLKQAL ADD ALLLECLYTKDDKVISKSIAQLNSSDVLKLLH++IS IQSRGAILVCA+PWL
Subjt:  GDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL

Query:  RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDL
        RGLLLQHAS+IMSQESSLLALNSLYQLIE+RISTFQSALLLSSSLDFLYTGVLDEE  +NDAIVPIIYEE+DSD+ E +GDEMETDE+    EVEAFDDL
Subjt:  RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDL

Query:  SAGEVDDDMSE
        SAGEVDDDMSE
Subjt:  SAGEVDDDMSE

A0A6J1D938 WD repeat-containing protein 43

1.4e-165

80.39

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSA KLS+GPVLSMKHPPFVSEC+NI+N EDSIVVLSVSVSGVAY+W+LK LSED+V+P KVTVK N+ +SAEENHGSAKKNRISV++S I G GDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEK-----------EGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTM
        VLVTHGSMD PQ ++ NIGY  KED N A EK           +GPHEI+QAVT+PKSKKSKKKRAASD+DS  AGDVS VGN D S+VLFNDD+NEPTM
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEK-----------EGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTM

Query:  GDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL
        G+KLASLNL +Q+EDE+HEQ+EPSVPAIPPSADSVQVLLKQAL ADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLH+LISIIQSRGAILVCA+PWL
Subjt:  GDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWL

Query:  RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVE-VEAFDD
        RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSA+LLSSSLDFLYTGVLDEE ++NDAIVPIIYE++D  D + SGDEMETDE+    E  EAF D
Subjt:  RGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVE-VEAFDD

Query:  LSAGEVDD
        LSAGEVDD
Subjt:  LSAGEVDD

A0A6J1HI85 WD repeat-containing protein 43 isoform X2

1.0e-200

97.25

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVL          NIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

A0A6J1HJF3 WD repeat-containing protein 43 isoform X1

2.0e-209

99.75

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

A0A6J1KMD0 WD repeat-containing protein 43

2.9e-195

95.01

Show/hide

Query:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
        MSAGKLS+GPVLSMKHPPF+SECRN+NNGEDSIVVLSVSVSGVAYLWKLKFLSEDKV+PTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS
Subjt:  MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVS

Query:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE
        VLVTHGSMDLPQHTVL          NIALEKEGPHEI+QAVTSPKSKKSKKKRAASDLDSQ AGDVSDVGNED SNVLFNDDLNEPTMGDKLA+LNLEE
Subjt:  VLVTHGSMDLPQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEE

Query:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
        QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI
Subjt:  QNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRI

Query:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEV-EAFDDLSAGEVDDDMS
        MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD EAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEV EAFDDLSAGEVDDDMS
Subjt:  MSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEV-EAFDDLSAGEVDDDMS

Query:  E
        E
Subjt:  E

SwissProt top hits

e value

%identity

Alignment

Q15061 WD repeat-containing protein 43

2.8e-06

27.27

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Query:  NEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVC
        NE ++ ++L +++++   + +   Q            +S  VLL Q L ++D  +L + L T++  +I K++ ++    ++ LL  L   +Q      V 
Subjt:  NEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVC

Query:  AIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEE----AEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGG
         + WL+ +L  HAS + +    +  L +LYQL+ESR+ TFQ    L   L  L T V   E    A        ++YEE+ S++ ES  +  + D E   
Subjt:  AIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEE----AEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGG

Query:  VEVEAFDDLSAGEVDDDMSE
         E E   + S  E D+D+ E
Subjt:  VEVEAFDDLSAGEVDDDMSE

Q6ZQL4 WD repeat-containing protein 43

6.3e-06

27.4

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Query:  EPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCA
        E T+ ++L +++L+ +   ++ +             +S  VLL Q L ++D  +L + L TK+  +I +++ ++    V+ LL  L   +Q         
Subjt:  EPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPSADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCA

Query:  IPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEEN----DAIVPIIYEEDDSDDKESSGDEMETDEEGGGV
        I WL+ +L  HAS + +    +  L +LYQL+ESR+ TFQ    L   L  L T V   E  +          ++YEE+ S++ ES  +  E D +    
Subjt:  IPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLDEEAEEN----DAIVPIIYEEDDSDDKESSGDEMETDEEGGGV

Query:  EVEAFDDLSAGEVDDDMSE
        E E  D      VD+D  E
Subjt:  EVEAFDDLSAGEVDDDMSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G15420.1 CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp12 (InterPro:IPR007148); Has 764 Blast hits to 656 proteins in 193 species: Archae - 0; Bacteria - 42; Metazoa - 237; Fungi - 154; Plants - 85; Viruses - 23; Other Eukaryotes - 223 (source: NCBI BLink).

1.2e-52

53.28

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Query:  KSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPA--IPPSADSVQVLLKQALRADDRALLLEC
        K KK  KKRA  + D     D     +ED   VL +D LNEPT+GDKL SL+L    +  + E +  S P    PP+A SV VLL+QAL ADDR+LLL+C
Subjt:  KSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPA--IPPSADSVQVLLKQALRADDRALLLEC

Query:  LYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD
        LY +D++VI+ S+A+LNS++VLKLL+AL+ I+QSRGAIL C IPW++ LLL H+S IMSQESSLLALN++YQLIESR+ST  +A+ +SS LD L    LD
Subjt:  LYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLLSSSLDFLYTGVLD

Query:  EEAEENDAIVPIIYEEDDSDDKESSGDE--METDEEGGGVEVEAFDDLSAGEVDDDMSE
        EE +E     P+IYE+ DSD+ E  G E  METDEE      EA D ++  E  DDMS+
Subjt:  EEAEENDAIVPIIYEEDDSDDKESSGDE--METDEEGGGVEVEAFDDLSAGEVDDDMSE

Sequences

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CDS sequence

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ATGAGTGCTGGAAAACTTAGTCAAGGTCCTGTTCTGTCCATGAAGCATCCTCCGTTTGTTTCTGAATGCAGAAATATTAACAATGGGGAAGATAGCATAGTTGTCTTGTC
AGTATCAGTATCAGGTGTAGCTTATTTATGGAAATTAAAGTTCCTATCAGAAGACAAGGTTAATCCGACTAAAGTCACTGTTAAAGTTAACAACGTCGAATCAGCTGAGG
AAAACCATGGAAGTGCTAAGAAGAATCGTATTTCTGTCCTCTCTTCCACAATACAAGGTTTAGGAGACAATGAAGTGTCAGTCCTTGTCACTCATGGCTCCATGGACCTA
CCGCAGCATACTGTCCTTAATATCGGTTATCCTGCAAAGGAAGACGCAAATATCGCACTTGAGAAAGAAGGTCCCCACGAGATCAAACAAGCAGTTACTTCGCCTAAAAG
TAAGAAAAGCAAAAAGAAGAGAGCTGCATCTGATCTCGACAGTCAGAAAGCTGGAGATGTCAGTGATGTCGGCAACGAAGATATGTCTAACGTTCTATTTAATGATGATT
TAAACGAGCCAACCATGGGAGATAAACTTGCGAGTTTGAATTTAGAGGAACAGAACGAAGACGAGAACCATGAACAAGATGAACCTTCCGTCCCTGCTATCCCACCAAGT
GCAGACTCTGTTCAGGTTTTGCTCAAGCAAGCACTACGTGCAGACGATCGTGCCCTTTTGCTAGAATGCTTATACACCAAGGATGATAAGGTCATCTCAAAATCAATAGC
ACAACTAAATTCTTCAGATGTTCTCAAGCTTTTGCACGCTCTCATATCCATTATCCAGTCAAGAGGGGCAATTCTTGTATGCGCCATCCCTTGGCTGAGAGGTTTACTTC
TTCAACATGCCAGTAGAATAATGTCTCAAGAATCTTCTCTACTCGCCTTGAATTCTCTATATCAGCTCATTGAGTCTAGAATTTCAACTTTCCAATCTGCTCTTCTGCTA
TCAAGTAGCTTAGACTTCCTTTACACAGGGGTCCTTGATGAGGAGGCGGAAGAAAATGATGCCATTGTACCGATTATTTACGAGGAGGACGATAGCGATGATAAGGAATC
GTCGGGAGATGAAATGGAAACCGATGAAGAGGGTGGAGGAGTTGAAGTAGAAGCCTTTGACGATCTTAGTGCTGGTGAAGTGGATGATGATATGAGTGAATGA

mRNA sequence

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Protein sequence

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MSAGKLSQGPVLSMKHPPFVSECRNINNGEDSIVVLSVSVSGVAYLWKLKFLSEDKVNPTKVTVKVNNVESAEENHGSAKKNRISVLSSTIQGLGDNEVSVLVTHGSMDL
PQHTVLNIGYPAKEDANIALEKEGPHEIKQAVTSPKSKKSKKKRAASDLDSQKAGDVSDVGNEDMSNVLFNDDLNEPTMGDKLASLNLEEQNEDENHEQDEPSVPAIPPS
ADSVQVLLKQALRADDRALLLECLYTKDDKVISKSIAQLNSSDVLKLLHALISIIQSRGAILVCAIPWLRGLLLQHASRIMSQESSLLALNSLYQLIESRISTFQSALLL
SSSLDFLYTGVLDEEAEENDAIVPIIYEEDDSDDKESSGDEMETDEEGGGVEVEAFDDLSAGEVDDDMSE

Carg18829 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome