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Carg18850 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18850
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDynein light chain
Genome locationCarg_Chr08:7534536..7535648
RNA-Seq ExpressionCarg18850
SyntenyCarg18850
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7026318.1 Dynein light chain 2, cytoplasmic [Cucurbita argyrosperma subsp. argyrosperma]5.4e-43100Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

XP_022930226.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]2.1e-4298.91Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

XP_022959519.1 dynein light chain 1, cytoplasmic-like [Cucurbita moschata]3.3e-4093.48Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

XP_023000010.1 dynein light chain 1, cytoplasmic-like [Cucurbita maxima]2.7e-4297.83Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

XP_023513722.1 dynein light chain 1, cytoplasmic-like [Cucurbita pepo subsp. pepo]6.0e-4297.83Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVK+VSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

TrEMBL top hitse value%identityAlignment
A0A1S3C7T8 Dynein light chain7.4e-3889.13Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGN MVK+VSEDRKP AV  TGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKD+AE IKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

A0A6J1EQC6 Dynein light chain9.9e-4398.91Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

A0A6J1H8A5 Dynein light chain1.6e-4093.48Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGN MVK+VSEDRKP+AVATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

A0A6J1KH59 Dynein light chain1.3e-4297.83Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVD+AIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

A0A6J1L253 Dynein light chain1.0e-3991.3Show/hide
Query:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        MSNDAKRSIQGN MVK+VSEDRKP+ +ATTGKKIVIKSADMFGDVQKEA+DVAI AFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFG+
Subjt:  MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

SwissProt top hitse value%identityAlignment
Q22799 Dynein light chain 1, cytoplasmic1.4e-1763.93Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +K VIK+ADM  D+Q++A+D A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG+
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Q3MHR3 Dynein light chain 2, cytoplasmic1.4e-1765.57Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG+
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Q78P75 Dynein light chain 2, cytoplasmic1.4e-1765.57Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG+
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Q96FJ2 Dynein light chain 2, cytoplasmic1.4e-1765.57Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG+
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Q9D0M5 Dynein light chain 2, cytoplasmic1.4e-1765.57Show/hide
Query:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +K VIK+ADM  D+Q++AVD A  A EK+++EKD+A YIKKEFDK++ PTWHCIVGRNFG+
Subjt:  KKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 114.3e-0640.98Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFG
        K +++ +DM   +Q +A+  A  A +   V   K +A +IKKEFD+R+G  W C+VG NFG
Subjt:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVE--KDVAEYIKKEFDKRHGPTWHCIVGRNFG

AT3G16120.1 Dynein light chain type 1 family protein2.1e-0537.7Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNFG
        K  ++  DM   +Q +A+ +A  + +   V     +A +IKKEFD+R+G  W C+VG NFG
Subjt:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSV--EKDVAEYIKKEFDKRHGPTWHCIVGRNFG

AT4G15930.1 Dynein light chain type 1 family protein2.7e-2458.7Show/hide
Query:  KRSIQGNQMVKTVSEDRKPM-----AVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        K+S+ G    +T+ +DR+       A    GK+ VIKSADM  D+QKEA+++AI AFEK+SVEKD+AE IKKEFDK+HG TWHCIVGRNFG+
Subjt:  KRSIQGNQMVKTVSEDRKPM-----AVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN

AT4G27360.1 Dynein light chain type 1 family protein2.8e-0537.1Show/hide
Query:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGN
        K V+   DM   ++++A+ +A  A +   V +   +A +IKKEFD+ +G  W CIVG +FG+
Subjt:  KIVIKSADMFGDVQKEAVDVAIVAFEKHSVEK--DVAEYIKKEFDKRHGPTWHCIVGRNFGN

AT5G20110.1 Dynein light chain type 1 family protein3.3e-0640.23Show/hide
Query:  QGNQMVKTVSEDRKPMAVATTGKKIV-IKSADMFGDVQKEAVDVA---IVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN
        +G + V  V  D      A      V I +ADM G +Q  A   A   + + EK S  K +A  +KKEFDK +GP WHCIVG +FG+
Subjt:  QGNQMVKTVSEDRKPMAVATTGKKIV-IKSADMFGDVQKEAVDVA---IVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGGCGGTGGCGACTACAGGCAAGAAAATCGTC
ATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATAGTGTAGAGAAAGATGTAGCGGAGTATATT
AAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTAACTGA
mRNA sequenceShow/hide mRNA sequence
AATTACGATTACCAGTCGAAGTATAGAGTAATTCCAAATTTCGAAACGAAAAGGTTGCAGAGATTGTGTGTAAGCTCCTCTTATTGGAGCACCCACCTGCTGAAT
CGACGAAGATAGGAGAAGAAGCGGAGAAAATGAGCAACGATGCGAAGAGAAGCATTCAAGGAAATCAAATGGTGAAAACTGTTTCGGAAGATCGGAAACCGATGG
CGGTGGCGACTACAGGCAAGAAAATCGTCATTAAGAGTGCCGATATGTTTGGTGATGTGCAGAAGGAGGCTGTTGATGTCGCCATAGTTGCATTTGAAAAGCATA
GTGTAGAGAAAGATGTAGCGGAGTATATTAAGAAAGAGTTCGATAAGAGGCATGGACCGACCTGGCATTGCATTGTTGGTCGTAATTTCGGTAACTGATCTCTCT
ATTTTTCTAATCTCTAGCTTATTTTTTTCGTGATTTTGCTGCTTGACAAGCTTCCTTCCGGTTCTAAGTCTGCTGGCTAGCGAAGTTTTAAAATCTGATTGGAAC
AGATCTAAGCTTGTAGATTTCTTATTAAAAATGTCTGTTCTGGTTAAACTAGTTTAGTAGAAAAAGGAGTGCTATTCCTAGATTGTGGATCTTCAATTTATTCAT
CTGCATTTGATAAAAATGATGTTCTTCCATTGTATTTCATTGAATTGAGCTGGTTTAGAATTGTAAATAACTTTCCAGGGTCCATGACAATGTTTCTTCTCAATT
TTTCCCATTCCCTTGCCTTTTATCCTCGGACCTTAGTTTTTTTCATGAAATTTGGACTCAGAATTACCATGAACTGATCTGTTGTCTCTTCGAGGTGATCACTAT
TAGTTTCATGAAGGTGGTTGGTTCCCTGAGATAGTTGTCCTGTTAGATTAGTCGAGTTGGAAATAGGTGGATCAAAAGATATAAAAAAGAAACCAAAACTATTTG
GCACTTCTAGAAGTTGTCCCTCTTGAACATAAGAACATCTTAACACTTTAAGCTGGTTCT
Protein sequenceShow/hide protein sequence
MSNDAKRSIQGNQMVKTVSEDRKPMAVATTGKKIVIKSADMFGDVQKEAVDVAIVAFEKHSVEKDVAEYIKKEFDKRHGPTWHCIVGRNFGN