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Carg18870 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18870
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionzinc finger protein 6-like
Genome locationCarg_Chr08:7634959..7635330
RNA-Seq ExpressionCarg18870
SyntenyCarg18870
Gene Ontology termsGO:0009736 - cytokinin-activated signaling pathway (biological process)
GO:0009740 - gibberellic acid mediated signaling pathway (biological process)
GO:0010090 - trichome morphogenesis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR013087 - Zinc finger C2H2-type
IPR036236 - Zinc finger C2H2 superfamily
IPR044299 - Zinc finger protein GIS3/ZFP5/ZFP6


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593997.1 Zinc finger protein 6, partial [Cucurbita argyrosperma subsp. sororia]1.3e-6398.37Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
        MKLFGFSVTASDQAT+GAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFT+TPPPSATVIWSRSGGAPPSAAGGGG
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG

Query:  GEVNGENGVDLHLSLAPSSRIFC
        GEVNGENGVDLHLSLAPSSRIFC
Subjt:  GEVNGENGVDLHLSLAPSSRIFC

KGN47401.1 hypothetical protein Csa_022997 [Cucumis sativus]1.2e-3267.38Show/hide
Query:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP
        MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRERQLAKQ L   P KH R F ++ PPS+TV IWS +G APP
Subjt:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP

Query:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC
           G          GGGEVN E NGVDLHLSLAPSS RIFC
Subjt:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC

XP_004150094.1 zinc finger protein 6 [Cucumis sativus]1.2e-3267.38Show/hide
Query:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP
        MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRERQLAKQ L   P KH R F ++ PPS+TV IWS +G APP
Subjt:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP

Query:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC
           G          GGGEVN E NGVDLHLSLAPSS RIFC
Subjt:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC

XP_022930487.1 zinc finger protein 6-like [Cucurbita moschata]2.4e-6299.19Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
        MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGG
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG

Query:  GEVNGENGVDLHLSLAPSSRIFC
        GEVNGENGVDLHLSLAPSSRIFC
Subjt:  GEVNGENGVDLHLSLAPSSRIFC

XP_023514440.1 zinc finger protein 6-like [Cucurbita pepo subsp. pepo]2.6e-64100Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
        MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG

Query:  GEVNGENGVDLHLSLAPSSRIFC
        GEVNGENGVDLHLSLAPSSRIFC
Subjt:  GEVNGENGVDLHLSLAPSSRIFC

TrEMBL top hitse value%identityAlignment
A0A0A0KI02 C2H2-type domain-containing protein5.6e-3367.38Show/hide
Query:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP
        MKLFGFSVTAS  +T     +GAPC N N   KRFECQFCGREFANSQALGGHQNAHKRERQLAKQ L   P KH R F ++ PPS+TV IWS +G APP
Subjt:  MKLFGFSVTASDQAT-----MGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ-LRFDPNKHPRFFTSTPPPSATV-IWSRSGGAPP

Query:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC
           G          GGGEVN E NGVDLHLSLAPSS RIFC
Subjt:  SAAG---------GGGGEVNGE-NGVDLHLSLAPSS-RIFC

A0A6J1C9X8 zinc finger protein 5-like3.1e-3162.12Show/hide
Query:  MKLFGFSVT--ASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFD-------PNKHPRFFTSTPPPSATVIWSRSGGA
        MKLFGFSVT  A +     A  A  NKD+KRFECQFCGR+FANSQALGGHQNAHKRER LAKQLRFD        NKHPRF +ST PP+          A
Subjt:  MKLFGFSVT--ASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFD-------PNKHPRFFTSTPPPSATVIWSRSGGA

Query:  PPSAAGGGGGEVNGENGVDLHLSLAPSSRIFC
        PP  A     E+ G+NGVDLHL+LAPSS IFC
Subjt:  PPSAAGGGGGEVNGENGVDLHLSLAPSSRIFC

A0A6J1EQN3 zinc finger protein 6-like1.2e-6299.19Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
        MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGG
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG

Query:  GEVNGENGVDLHLSLAPSSRIFC
        GEVNGENGVDLHLSLAPSSRIFC
Subjt:  GEVNGENGVDLHLSLAPSSRIFC

A0A6J1KF91 zinc finger protein 6-like1.2e-6299.19Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG
        MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAA GGG
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGG

Query:  GEVNGENGVDLHLSLAPSSRIFC
        GEVNGENGVDLHLSLAPSSRIFC
Subjt:  GEVNGENGVDLHLSLAPSSRIFC

A0A6J1KZQ7 zinc finger protein 6-like3.1e-3168.46Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPR-FFTSTPPPSATVI-----WSRSGGAPPS
        MKLFG+SVTAS + ++GAPC N     KRFECQFCGREFANSQALGGHQNAHKRERQLAKQL       PR FFT TPPPSA  I     +     APPS
Subjt:  MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPR-FFTSTPPPSATVI-----WSRSGGAPPS

Query:  AAGGGGGEVNGE-NGVDLHLSLAPSS-RIF
            GGGE+NGE NGVDLHLSLAPSS RIF
Subjt:  AAGGGGGEVNGE-NGVDLHLSLAPSS-RIF

SwissProt top hitse value%identityAlignment
P93751 Zinc finger protein 83.5e-0868.42Show/hide
Query:  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ
        N +++RFEC +C R F  SQALGGHQNAHKRERQ AK+
Subjt:  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ

Q39264 Zinc finger protein 58.4e-1044.74Show/hide
Query:  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNK
        +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAHK+ER   K+L+    +
Subjt:  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNK

Q39265 Zinc finger protein 63.4e-1138.95Show/hide
Query:  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLR------------FDPNKHPRFFTSTPPP
        +KLFG ++    +  +Q++   P +    + +++ECQ+C REFANSQALGGHQNAHK+ERQL K+ +            F P+ +P      P P
Subjt:  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLR------------FDPNKHPRFFTSTPPP

Q9C9H1 Zinc finger protein GIS33.5e-0855.81Show/hide
Query:  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH
        ++++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Subjt:  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH

Q9FG05 Zinc finger protein GIS21.1e-0948.65Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPN
        ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHKRERQ  K+     N
Subjt:  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPN

Arabidopsis top hitse value%identityAlignment
AT1G10480.1 zinc finger protein 55.9e-1144.74Show/hide
Query:  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNK
        +KLFGF + +  +     T  +  ++ N       KR ECQ+CG+EFANSQALGGHQNAHK+ER   K+L+    +
Subjt:  MKLFGFSVTASDQ----ATMGAPCANLNKDD----KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNK

AT1G67030.1 zinc finger protein 62.4e-1238.95Show/hide
Query:  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLR------------FDPNKHPRFFTSTPPP
        +KLFG ++    +  +Q++   P +    + +++ECQ+C REFANSQALGGHQNAHK+ERQL K+ +            F P+ +P      P P
Subjt:  MKLFGFSV----TASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLR------------FDPNKHPRFFTSTPPP

AT1G68360.1 C2H2 and C2HC zinc fingers superfamily protein2.5e-0955.81Show/hide
Query:  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH
        ++++ECQ+C REF NSQALGGHQNAHK+ERQ  K+ +    ++
Subjt:  DKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKH

AT2G41940.1 zinc finger protein 82.5e-0968.42Show/hide
Query:  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ
        N +++RFEC +C R F  SQALGGHQNAHKRERQ AK+
Subjt:  NKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQ

AT5G06650.1 C2H2 and C2HC zinc fingers superfamily protein7.8e-1148.65Show/hide
Query:  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPN
        ++LFGF   AS + +      N N    KDD   KRF+C +C R F  SQALGGHQNAHKRERQ  K+     N
Subjt:  MKLFGFSVTASDQATMGAPCANLN----KDD---KRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCG
TGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCA
CTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGAT
CTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTGTTTGGTTTTTCAGTGACGGCTAGTGATCAAGCCACCATGGGTGCGCCATGCGCGAACCTCAACAAGGACGATAAGCGATTCGAGTGCCAATTCTGTGGCCG
TGAGTTCGCCAATTCTCAAGCTCTCGGCGGCCACCAGAACGCCCACAAGCGCGAGCGCCAGCTCGCCAAACAACTCCGTTTCGATCCCAATAAACATCCTCGTTTTTTCA
CTTCCACGCCGCCGCCCTCCGCCACCGTCATCTGGTCCAGATCTGGTGGTGCTCCGCCGTCTGCTGCTGGTGGTGGTGGTGGTGAAGTGAATGGGGAAAATGGCGTTGAT
CTCCACCTCAGTCTCGCGCCATCCTCAAGGATCTTCTGTTAA
Protein sequenceShow/hide protein sequence
MKLFGFSVTASDQATMGAPCANLNKDDKRFECQFCGREFANSQALGGHQNAHKRERQLAKQLRFDPNKHPRFFTSTPPPSATVIWSRSGGAPPSAAGGGGGEVNGENGVD
LHLSLAPSSRIFC