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Carg18875 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18875
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionGlycine-rich protein family
Genome locationCarg_Chr08:7654769..7655979
RNA-Seq ExpressionCarg18875
SyntenyCarg18875
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594002.1 hypothetical protein SDJN03_13478, partial [Cucurbita argyrosperma subsp. sororia]4.3e-7180.23Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MALVFFPFPRMSISAVAVFY+LTSCYLTG                                  IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

KAG7026342.1 hypothetical protein SDJN02_12843, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-77100Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCG
        MALVFFPFPRMSISAVAVFYLLTSCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCG
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCG

Query:  YGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        YGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  YGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_022930500.1 uncharacterized protein LOC111436937 [Cucurbita moschata]7.3e-7180.23Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MALVFFPFPRMSISAVAVFYLLTSCYLTG                                  IYSACEESYRLKASGNVEVPLEKTEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_023000051.1 uncharacterized protein LOC111494359 [Cucurbita maxima]7.6e-6877.4Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MALVFFPF R+SISAVAVFYLLTSCYL G                                  IYSACEESYRLKASGNVEVPLE+TEEYCNGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNK VIGFSFIILG+FSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

XP_023514279.1 uncharacterized protein LOC111778597 [Cucurbita pepo subsp. pepo]3.2e-6676.27Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        M LVFFPFPR+SISAVA+FYLLTS YL G                                  IYSACEESYRLKASGNVEVPLE+TEEYCNGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAET KAWRASNKTVIGFSFIIL LFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

TrEMBL top hitse value%identityAlignment
A0A0A0KCE5 Uncharacterized protein2.0e-5062.43Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLT-----------------------------SCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLD
        MAL F  F R+ +SA+ +FYLLT                              C+    IYSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET LVLD
Subjt:  MALVFFPFPRMSISAVAVFYLLT-----------------------------SCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLD

Query:  CIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        CI GIFSNFLFYN+ATLQDVRDT+HAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF IL L SL L
Subjt:  CIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A1S3C8B8 uncharacterized protein LOC1034978043.1e-5162.15Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLT---------------------------------SCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MAL F  + R+ +SA+ +FYLLT                                  C+    IYSACEESYRLK SGN+EVPLEKTEEYCNGPCL ET 
Subjt:  MALVFFPFPRMSISAVAVFYLLT---------------------------------SCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCI+GIFSNFLFYN+ATLQDVRDTIHAGCGYGPQRGNFDVLEHI AE   A RASN   +GFSF ILGLFSL L
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A6J1CAS9 uncharacterized protein LOC111009540 isoform X13.0e-4675.83Show/hide
Query:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRA
        C+    IY ACEES RLK SGNVEVP+EKT+E+CNGPCLGETHLVLDCI+ IF+NFLFYN+ATLQDVRDTI AGC YGPQRGNFDV +HIRAE  KA RA
Subjt:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRA

Query:  SNKTVIGFSFIILGLFSLFL
        SN  V+GFSFIILG F   L
Subjt:  SNKTVIGFSFIILGLFSLFL

A0A6J1EX17 uncharacterized protein LOC1114369373.6e-7180.23Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MALVFFPFPRMSISAVAVFYLLTSCYLTG                                  IYSACEESYRLKASGNVEVPLEKTEEYC+GPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

A0A6J1KET4 uncharacterized protein LOC1114943593.7e-6877.4Show/hide
Query:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH
        MALVFFPF R+SISAVAVFYLLTSCYL G                                  IYSACEESYRLKASGNVEVPLE+TEEYCNGPCLGETH
Subjt:  MALVFFPFPRMSISAVAVFYLLTSCYLTGN---------------------------------IYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETH

Query:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL
        LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNK VIGFSFIILG+FSLFL
Subjt:  LVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G56320.1 BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT5G49350.2)2.0e-2140Show/hide
Query:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRA
        C+    +Y  C E++RL   G  +VP E+T+ +CNGPC  ET LVL CI+ + S+F+FYN+AT +DVR+ +  GC     RGNF+V ++  A+     +A
Subjt:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKAWRA

Query:  SNKTVIGFSFIILGLFSLFL
          K    F  ++LG   L L
Subjt:  SNKTVIGFSFIILGLFSLFL

AT5G49350.1 Glycine-rich protein family4.8e-2849.48Show/hide
Query:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKA
        C    +IY  C+ES+RL  +G++ +PL +TEE+C GPC  ETHL L+CI+ I  ++ F+N+AT+ D+R+T+ +GC YGP+RG F+VLEHI  E + A
Subjt:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKA

AT5G49350.2 Glycine-rich protein family4.8e-2849.48Show/hide
Query:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKA
        C    +IY  C+ES+RL  +G++ +PL +TEE+C GPC  ETHL L+CI+ I  ++ F+N+AT+ D+R+T+ +GC YGP+RG F+VLEHI  E + A
Subjt:  CYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDVLEHIRAETDKA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGTAATATATACAGCGCGTGTGAAGA
ATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTG
ACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTG
TTGGAACACATAAGAGCTGAAACAGACAAAGCATGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTATTCCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCTCGTCTTCTTTCCTTTCCCTAGAATGTCCATTTCAGCTGTTGCCGTCTTCTACCTTCTTACCTCTTGTTATTTGACCGGTAATATATACAGCGCGTGTGAAGA
ATCGTATAGATTAAAGGCGAGTGGGAATGTGGAGGTCCCACTGGAAAAAACAGAAGAATACTGCAACGGGCCGTGTTTGGGTGAAACGCACTTAGTGCTTGATTGCATTG
ACGGCATTTTTAGCAATTTCTTGTTTTACAATAAGGCCACGTTGCAAGATGTTAGGGACACCATCCACGCTGGATGTGGCTATGGCCCTCAAAGAGGAAACTTCGACGTG
TTGGAACACATAAGAGCTGAAACAGACAAAGCATGGAGGGCTTCGAATAAGACAGTTATTGGATTTAGCTTTATTATTTTGGGCCTTTTTAGCTTATTCCTTTGA
Protein sequenceShow/hide protein sequence
MALVFFPFPRMSISAVAVFYLLTSCYLTGNIYSACEESYRLKASGNVEVPLEKTEEYCNGPCLGETHLVLDCIDGIFSNFLFYNKATLQDVRDTIHAGCGYGPQRGNFDV
LEHIRAETDKAWRASNKTVIGFSFIILGLFSLFL