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Carg18893 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18893
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein SINE3
Genome locationCarg_Chr08:7736438..7737504
RNA-Seq ExpressionCarg18893
SyntenyCarg18893
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6594019.1 hypothetical protein SDJN03_13495, partial [Cucurbita argyrosperma subsp. sororia]1.4e-110100Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSGSGVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

XP_022930352.1 uncharacterized protein LOC111436822 [Cucurbita moschata]3.5e-10999.08Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLV A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSGSGVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

XP_022999957.1 uncharacterized protein LOC111494286 [Cucurbita maxima]3.3e-10797.7Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFG SNNLDEASAGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVD+FLAIPQERDLITRLISSKSHVLSLGLFLWIIVLV A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSGSGVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

XP_023514806.1 uncharacterized protein LOC111779010 [Cucurbita pepo subsp. pepo]8.1e-10696.31Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVV NI+QIPDID+SFLQDVNPALSVSCESSLFPEL PSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLV A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSG GVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

XP_038876305.1 uncharacterized protein LOC120068561 [Benincasa hispida]1.0e-8478.8Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEK+ K+YQTP RDQ ANRRS+KP KI K LTATFSS  DDKIQPISKEDFSPISVV++I+QIPDIDS+FLQ VNPA S SCE+SLF +LSPSSVV+FDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        +QLDKVPVNF GSN++DEASAGSVE +IAVN LRRAL+QVLQSTDVDHQSKKLIDAS+ IIVD+FLAIPQERD I +LIS K+HVLSL +FLWIIVL  A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FF GSGV++ FIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

TrEMBL top hitse value%identityAlignment
A0A1S4E1Y8 uncharacterized protein LOC1034977818.0e-7570.97Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKR K++QTP R+Q  NRRS+KP KI K LTA+FSS  +DKI  ISKE+ SPISVVS+++QI DIDSSFLQ VNP  S  C++SLFP+LSPSSVV+FDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        + LDKV V+F GSN+++EASAGS+EAEIAVN LRRAL+QVL STDVDHQSKKLIDAS+RIIVD+FLAIPQERD I +LIS K++VLS+ +FLWI+VL  A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FF GSGV++ F GPLPT
Subjt:  FFSGSGVENCFIGPLPT

A0A6J1CAA2 uncharacterized protein LOC1110098289.4e-7672.81Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKR KEYQTP RD AANRRS+KP KI KSL ATFSS  DDK+QPIS EDFSPI  VS+I+Q+PD+D SFLQ VNPALS S ESS FP+LSPSSVVT +N
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        +Q DK+PVNF GSN+L + SA SVEAEIAV++LRRALSQVLQSTDVDHQSKKL+DAS+RIIV++F+AIPQE+D I +LIS+KS VLSL  FLWII+L  A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FF GSG ++ F GP PT
Subjt:  FFSGSGVENCFIGPLPT

A0A6J1EQ83 uncharacterized protein LOC1114368221.7e-10999.08Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLV A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSGSGVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

A0A6J1H5Y6 uncharacterized protein LOC111460327 isoform X14.5e-7874.65Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        ME+R K+ QTP RDQAANRRS+KPLKI K LTATFSS  DDKIQ  SK+DFS ISVVS+++QIPDID SFL DVNPALS  C SSL P+LSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
         QLDKVPVNF GSN+LDE  AGSV AEIAV+ L RAL+QVLQSTDVDHQ+KKLIDAS+RIIVD+FLAIPQ+RD I ++IS+K+ VLS+ LFLWIIVL  A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FF  S V++ FIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

A0A6J1KL67 uncharacterized protein LOC1114942861.6e-10797.7Show/hide
Query:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
        MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPI KEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN
Subjt:  MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDN

Query:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA
        KQLDKVPVNFG SNNLDEASAGSVEAEIAVNYLRRAL QVLQSTDVDHQSKKLIDASVRIIVD+FLAIPQERDLITRLISSKSHVLSLGLFLWIIVLV A
Subjt:  KQLDKVPVNFGGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFA

Query:  FFSGSGVENCFIGPLPT
        FFSGSGVENCFIGPLPT
Subjt:  FFSGSGVENCFIGPLPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAAAGGACGAAAGAATACCAAACTCCTCTGAGAGATCAAGCTGCGAATCGTAGATCAAAGAAGCCTCTGAAGATCACCAAGAGTTTGACTGCCACATTTTCATC
ATTTTGCGACGATAAAATCCAGCCAATTTCGAAGGAAGACTTTTCTCCGATTTCCGTTGTCTCAAACATCAGTCAAATTCCTGATATCGACAGTAGTTTCTTGCAAGATG
TCAATCCAGCTCTTTCAGTTTCCTGCGAGAGCTCGCTTTTCCCCGAACTTTCTCCATCTTCAGTTGTTACTTTTGACAATAAGCAGCTTGACAAGGTTCCAGTTAATTTT
GGTGGATCTAATAATTTAGATGAAGCAAGCGCGGGTTCAGTGGAGGCGGAGATTGCCGTGAATTACTTAAGGCGTGCTCTTAGTCAAGTCTTGCAATCGACGGATGTTGA
TCATCAGTCTAAGAAGCTGATAGATGCATCCGTGAGGATCATTGTGGACGAATTTCTCGCCATACCTCAAGAGAGAGACCTGATTACTCGGCTTATTTCTTCCAAAAGTC
ATGTTCTGTCTCTAGGTTTATTCCTATGGATCATCGTCTTGGTATTTGCTTTCTTTTCTGGTTCGGGAGTCGAGAACTGTTTCATTGGTCCACTGCCAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAAAGGACGAAAGAATACCAAACTCCTCTGAGAGATCAAGCTGCGAATCGTAGATCAAAGAAGCCTCTGAAGATCACCAAGAGTTTGACTGCCACATTTTCATC
ATTTTGCGACGATAAAATCCAGCCAATTTCGAAGGAAGACTTTTCTCCGATTTCCGTTGTCTCAAACATCAGTCAAATTCCTGATATCGACAGTAGTTTCTTGCAAGATG
TCAATCCAGCTCTTTCAGTTTCCTGCGAGAGCTCGCTTTTCCCCGAACTTTCTCCATCTTCAGTTGTTACTTTTGACAATAAGCAGCTTGACAAGGTTCCAGTTAATTTT
GGTGGATCTAATAATTTAGATGAAGCAAGCGCGGGTTCAGTGGAGGCGGAGATTGCCGTGAATTACTTAAGGCGTGCTCTTAGTCAAGTCTTGCAATCGACGGATGTTGA
TCATCAGTCTAAGAAGCTGATAGATGCATCCGTGAGGATCATTGTGGACGAATTTCTCGCCATACCTCAAGAGAGAGACCTGATTACTCGGCTTATTTCTTCCAAAAGTC
ATGTTCTGTCTCTAGGTTTATTCCTATGGATCATCGTCTTGGTATTTGCTTTCTTTTCTGGTTCGGGAGTCGAGAACTGTTTCATTGGTCCACTGCCAACTTAA
Protein sequenceShow/hide protein sequence
MEKRTKEYQTPLRDQAANRRSKKPLKITKSLTATFSSFCDDKIQPISKEDFSPISVVSNISQIPDIDSSFLQDVNPALSVSCESSLFPELSPSSVVTFDNKQLDKVPVNF
GGSNNLDEASAGSVEAEIAVNYLRRALSQVLQSTDVDHQSKKLIDASVRIIVDEFLAIPQERDLITRLISSKSHVLSLGLFLWIIVLVFAFFSGSGVENCFIGPLPT