; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg18916 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg18916
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionselenoprotein F-like
Genome locationCarg_Chr17:5561534..5565591
RNA-Seq ExpressionCarg18916
SyntenyCarg18916
Gene Ontology termsGO:0005788 - endoplasmic reticulum lumen (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0016491 - oxidoreductase activity (molecular function)
InterPro domainsIPR014912 - Selenoprotein F/M domain
IPR036249 - Thioredoxin-like superfamily
IPR038219 - Selenoprotein F/M, thioredoxin-like domain superfamily
IPR039992 - Selenoprotein F/M


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575383.1 Selenoprotein F, partial [Cucurbita argyrosperma subsp. sororia]4.9e-9099.41Show/hide
Query:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
        MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
Subjt:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV

Query:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKV+QRSSAI
Subjt:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

XP_008460012.1 PREDICTED: 15 kDa selenoprotein [Cucumis melo]1.3e-7990.12Show/hide
Query:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR
        MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        KLVFYPEIVGFIEE+KDQFPSV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

XP_022954272.1 selenoprotein F-like [Cucurbita moschata]1.7e-90100Show/hide
Query:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
        MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
Subjt:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV

Query:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Subjt:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

XP_022992419.1 selenoprotein F-like [Cucurbita maxima]1.8e-8999.41Show/hide
Query:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
        MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
Subjt:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV

Query:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        FYPEIVGFIEEEK QFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Subjt:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

XP_038875398.1 selenoprotein F [Benincasa hispida]2.9e-8292.44Show/hide
Query:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR
        MQLL GV+NPAT VTM   AT +IFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        KLVFYPEIVGFIEEEKDQFPSV VQY FNSPPKLILLDDEGQHKESIRIDNWKREHILQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

TrEMBL top hitse value%identityAlignment
A0A1S3CC00 15 kDa selenoprotein6.4e-8090.12Show/hide
Query:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR
        MQLL GV NPAT VT+   A AIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV DCLKCC EDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        KLVFYPEIVGFIEE+KDQFPSV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

A0A5A7T9G4 15 kDa selenoprotein6.0e-7885.25Show/hide
Query:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCTEDSDDATSKIT
        MQLL GV NPAT VT+   ATAIIFI+SMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ           ELV DCLKCC EDSDDATSKIT
Subjt:  MQLLTGVKNPATMVTM---ATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQ-----------ELVTDCLKCCTEDSDDATSKIT

Query:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        YSGA+LEVCMRKLVFYPEIVGFIEE+KDQFPSV VQYTFNSPPKLILLDDEGQHKESIRIDNWKREH LQFL+EKVK RSSAI
Subjt:  YSGAMLEVCMRKLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

A0A6J1GQK6 selenoprotein F-like8.1e-91100Show/hide
Query:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
        MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
Subjt:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV

Query:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Subjt:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

A0A6J1JXH9 selenoprotein F-like8.9e-9099.41Show/hide
Query:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
        MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV
Subjt:  MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLV

Query:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
        FYPEIVGFIEEEK QFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI
Subjt:  FYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI

A0A6J1KPJ2 selenoprotein F-like7.8e-7887.65Show/hide
Query:  MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR
        MQL   VK PAT+V MA    AIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELV DCLKCCTEDSDDATSKITYSGA+LEVCMR
Subjt:  MQLLTGVKNPATMVTMA---TAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMR

Query:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS
        KLVFYPEIVGFIEEEKD+FPSV VQY FNSPPKL LLDDEGQHKESIRIDNWKREHILQFL++KVK  S+
Subjt:  KLVFYPEIVGFIEEEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSS

SwissProt top hitse value%identityAlignment
A1Z623 Selenoprotein F2.0e-1736.36Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI
        + SS  C +LGF+   LC  C  L ++   Q L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ
        LLDD G   E + I  W  + + +FL EK+++
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ

A8YXY3 Selenoprotein F5.2e-1836.36Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ
        LLDD G   E + I  W  + + +FL EK+++
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ

O60613 Selenoprotein F8.8e-1836.36Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI
        + SS  C +LGF+   LCS C  L ++    +L  DC  CC E++   T K+ Y+GA+LEVC  KL  +P++  F+  +K + F  + ++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ
        LLDD G   E + I  W  + + +FL EK+++
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ

Q802F3 Selenoprotein F1.5e-1736.36Show/hide
Query:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI
        +LSS  C +LGF+   LCS C  L ++  +Q L   C +CC E++     K+ Y GA+LEVC  KL  +P++  F+  +K + F  + ++Y   S P L 
Subjt:  QLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIEEEKDQ-FPSVNVQYTFNSPPKLI

Query:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ
        LLDD G   E + I  W  + + +FL EK+++
Subjt:  LLDDEGQHKESIRIDNWKREHILQFLKEKVKQ

Q923V8 Selenoprotein F2.8e-1633.75Show/hide
Query:  GVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEI
        G   PA  + +  A  F A   L     + SS  C +LGF+   LCS C  L ++     L   C  CC E++   T K+ Y+GA+LEVC  KL  +P++
Subjt:  GVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEI

Query:  VGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQ
          F+  +K + F  + ++Y   S P L LLDD G   E + I  W  + + +FL EK+++
Subjt:  VGFIEEEKDQ-FPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQ

Arabidopsis top hitse value%identityAlignment
AT1G05720.1 selenoprotein family protein4.4e-6570.25Show/hide
Query:  ATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIE
        A MV ++  +I I +  ++ +KEQLS++ECEDLGF+GLALCSDCH+L+EY+KDQELV+DCLKCC +DS+D+ SK+TYSGA+LEVCMRKLVFYPEIVGFIE
Subjt:  ATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIE

Query:  EEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSA
        EEK++FPSV VQY FNSPPKLI+LD++G+HKESIRIDNWKREH+LQ+++EKVK  +++
Subjt:  EEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTCAGCTC
GAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAAATGTT
GCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCATTGAA
GAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGGATTGA
TAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
AAAAATATCACTCTCTAAATTTGAAGTTAAGAATTGGTCTTTTCAGTGAGTGTTCTCTTCTGATCGTCTCGAGGCTTTGCTTCTTCTTCACCCACAGTCGCCGGCGAACA
CAGAGATGCAGCTTCTTACAGGTGTCAAGAATCCTGCTACAATGGTGACGATGGCGACGGCGATCATTTTCATTGCGTCAATGCCGTTAGCTTGGTCAAAGGAGCAACTC
AGCTCGAGGGAATGTGAGGATCTAGGTTTCACAGGCCTTGCTCTCTGTTCCGATTGTCATACTTTAGCGGAATATATCAAAGATCAAGAATTAGTGACGGATTGTTTGAA
ATGTTGCACGGAGGATTCTGATGATGCCACGAGTAAGATAACTTATTCTGGTGCCATGCTGGAGGTCTGCATGAGGAAGCTAGTTTTCTATCCTGAAATTGTTGGCTTCA
TTGAAGAAGAAAAGGATCAATTCCCTTCAGTTAATGTTCAATATACCTTCAACTCTCCACCGAAGCTGATTTTGCTGGATGATGAGGGCCAACATAAAGAAAGCATTAGG
ATTGATAATTGGAAACGTGAACATATTTTGCAGTTCCTGAAAGAGAAGGTTAAGCAGCGATCTTCAGCAATTTAAGGTTCTCACTTTTTTCCCTTCTTAATCTCTGTAAA
AAAAACTTAATGCAGAATTTGAACGAAACTATTATCAGCCAAAAAACTTGAGGTGAGTGAACACTAATTTTGTCAATGTCGTCAAGGATAGTTGGAAAGATAACTGATTT
CCTCGTCTAAATCTTTTACTCCTTAAAAATCCTTTAGAAGTTTGACTGATCTTTTATAAAATTTTGTACACATTGTTGTTTACACGCTTTATCATCTAACAACGTTGTAT
CTAGCCCGATCATTTTTTTTCCCTATCTATAATGTAAACCAATCTAACCTTTTTTTTTTTT
Protein sequenceShow/hide protein sequence
MQLLTGVKNPATMVTMATAIIFIASMPLAWSKEQLSSRECEDLGFTGLALCSDCHTLAEYIKDQELVTDCLKCCTEDSDDATSKITYSGAMLEVCMRKLVFYPEIVGFIE
EEKDQFPSVNVQYTFNSPPKLILLDDEGQHKESIRIDNWKREHILQFLKEKVKQRSSAI